Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-542 |
| Cow position: | chr13:56333513-56334054 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 1-571 |
| Cow position: | chr13:56292396-56291831 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 202 |
| Conread position: | 2-409 |
| Cow position: | chr13:39984454-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-444 |
| Cow position: | chr13:22125484-22125925 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 3-481 |
| Cow position: | chr13:22125148-22125626 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 3-481 |
| Cow position: | chr13:24162874-24163352 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 3-492 |
| Cow position: | chr13:39984119-39984608 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 231 |
| Conread position: | 3-547 |
| Cow position: | chr13:22124980-22125522 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 329 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 3-547 |
| Cow position: | chr13:24162706-24163248 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 3-550 |
| Cow position: | chr13:22124728-22125274 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 3-550 |
| Cow position: | chr13:24162454-24163000 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 334 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 3-555 |
| Cow position: | chr13:39984035-39984586 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 156 |
| Conread position: | 3-571 |
| Cow position: | chr13:39984287-39984854 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 228 |
| Conread position: | 4-363 |
| Cow position: | chr13:39984540-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 227 |
| Conread position: | 5-532 |
| Cow position: | chr13:22124898-22125425 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 325 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 171, 177 |
| Conread position: | 5-532 |
| Cow position: | chr13:24162624-24163151 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 13-336 |
| Cow position: | chr13:56333945-56334277 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 13-484 |
| Cow position: | chr13:39930709-39931178 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 13-547 |
| Cow position: | chr13:22124822-22125354 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 13-547 |
| Cow position: | chr13:24162548-24163080 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 329 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 408, 413 |
| Conread position: | 13-555 |
| Cow position: | chr13:56333609-56334159 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 145 |
| Conread position: | 13-574 |
| Cow position: | chr13:56292799-56292238 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 14-292 |
| Cow position: | chr13:56317571-56317846 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 147, 94 |
| Conread position: | 14-400 |
| Cow position: | chr13:24162969-24163355 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 14-456 |
| Cow position: | chr13:24163137-24163578 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 14-480 |
| Cow position: | chr13:22125243-22125709 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 14-527 |
| Cow position: | chr13:22125411-22125924 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 14-531 |
| Cow position: | chr13:56333778-56334304 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 14-545 |
| Cow position: | chr13:56292293-56291772 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 17-539 |
| Cow position: | chr13:39930629-39931151 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 22-569 |
| Cow position: | chr13:56292875-56292333 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 344 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 23-532 |
| Cow position: | chr13:22125336-22125845 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-532 |
| Cow position: | chr13:24163062-24163571 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-571 |
| Cow position: | chr13:39983971-39984518 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 220 |
| Conread position: | 35-571 |
| Cow position: | chr13:39984235-39984771 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 199 |
| Conread position: | 36-493 |
| Cow position: | chr13:39983816-39984273 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 215, 198 |
| Conread position: | 38-570 |
| Cow position: | chr13:39983902-39984434 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 44-408 |
| Cow position: | chr13:56317881-56318240 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 84-547 |
| Cow position: | chr13:22124725-22125186 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 87-547 |
| Cow position: | chr13:22125148-22125606 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 87-547 |
| Cow position: | chr13:24162874-24163332 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 89-547 |
| Cow position: | chr13:39930617-39931073 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 0 |
| Conread position: | 108-544 |
| Cow position: | chr13:39983804-39984240 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 140-540 |
| Cow position: | chr13:22124697-22125096 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 140-547 |
| Cow position: | chr13:39930584-39930989 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 0 |
| Conread position: | 181-493 |
| Cow position: | chr13:56317929-56318241 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 136, 143 |
| Conread position: | 190-575 |
| Cow position: | chr13:56292875-56292494 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 100 |
Show alignments to all cow chromosomes.