Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-240
Cow position:
Alignm length: 241
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 71, 87

Conread position: 1-366
Cow position:
Alignm length: 367
Alignm identity: 235
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 71, 80

Conread position: 1-372
Cow position:
Alignm length: 375
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 87

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 258
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 87

Conread position: 1-543
Cow position:
Alignm length: 545
Alignm identity: 328
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 75, 56

Conread position: 1-544
Cow position:
Alignm length: 546
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 347

Conread position: 1-555
Cow position:
Alignm length: 560
Alignm identity: 330
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 234, 190

Conread position: 1-555
Cow position:
Alignm length: 559
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 8

Conread position: 1-570
Cow position:
Alignm length: 573
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 332

Conread position: 1-570
Cow position:
Alignm length: 573
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 348

Conread position: 1-571
Cow position:
Alignm length: 576
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 76

Conread position: 2-324
Cow position:
Alignm length: 324
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 247, 263

Conread position: 2-408
Cow position:
Alignm length: 410
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 145

Conread position: 2-544
Cow position:
Alignm length: 548
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 12

Conread position: 2-555
Cow position:
Alignm length: 559
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 157

Conread position: 2-570
Cow position:
Alignm length: 574
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 145

Conread position: 2-571
Cow position:
Alignm length: 574
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 148

Conread position: 2-571
Cow position:
Alignm length: 576
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 84

Conread position: 3-204
Cow position:
Alignm length: 202
Alignm identity: 139
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 3-397
Cow position:
Alignm length: 398
Alignm identity: 258
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 212, 339

Conread position: 3-403
Cow position:
Alignm length: 401
Alignm identity: 254
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 3-464
Cow position:
Alignm length: 465
Alignm identity: 294
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 73, 88

Conread position: 3-464
Cow position:
Alignm length: 463
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 9

Conread position: 3-464
Cow position:
Alignm length: 464
Alignm identity: 276
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 335, 344

Conread position: 3-471
Cow position:
Alignm length: 469
Alignm identity: 287
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 3-480
Cow position:
Alignm length: 480
Alignm identity: 301
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 73, 85

Conread position: 3-481
Cow position:
Alignm length: 481
Alignm identity: 292
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 7, 11

Conread position: 3-486
Cow position:
Alignm length: 488
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 18

Conread position: 3-543
Cow position:
Alignm length: 544
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 86

Conread position: 3-543
Cow position:
Alignm length: 544
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 347

Conread position: 3-544
Cow position:
Alignm length: 545
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 327

Conread position: 3-553
Cow position:
Alignm length: 554
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 9

Conread position: 4-547
Cow position:
Alignm length: 548
Alignm identity: 330
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 71, 95

Conread position: 5-543
Cow position:
Alignm length: 542
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 10

Conread position: 5-555
Cow position:
Alignm length: 555
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 157

Conread position: 8-550
Cow position:
Alignm length: 548
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 173

Conread position: 10-442
Cow position:
Alignm length: 433
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-486
Cow position:
Alignm length: 478
Alignm identity: 282
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 66, 78

Conread position: 10-571
Cow position:
Alignm length: 566
Alignm identity: 348
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 168, 173

Conread position: 11-462
Cow position:
Alignm length: 454
Alignm identity: 279
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 64, 70

Conread position: 11-570
Cow position:
Alignm length: 565
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 170

Conread position: 13-325
Cow position:
Alignm length: 314
Alignm identity: 199
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 63, 74

Conread position: 13-409
Cow position:
Alignm length: 398
Alignm identity: 238
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 62, 68

Conread position: 13-459
Cow position:
Alignm length: 448
Alignm identity: 280
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 409, 421

Conread position: 13-493
Cow position:
Alignm length: 483
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 137

Conread position: 13-504
Cow position:
Alignm length: 494
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 134

Conread position: 13-524
Cow position:
Alignm length: 515
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 145

Conread position: 13-544
Cow position:
Alignm length: 535
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 146

Conread position: 13-555
Cow position:
Alignm length: 546
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 134

Conread position: 13-555
Cow position:
Alignm length: 544
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 250

Conread position: 13-570
Cow position:
Alignm length: 563
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 53

Conread position: 13-570
Cow position:
Alignm length: 559
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 553, 525

Conread position: 13-571
Cow position:
Alignm length: 562
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 136

Conread position: 13-571
Cow position:
Alignm length: 561
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 506, 499

Conread position: 13-575
Cow position:
Alignm length: 570
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 137

Conread position: 14-293
Cow position:
Alignm length: 281
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 75

Conread position: 14-303
Cow position:
Alignm length: 290
Alignm identity: 177
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 14-409
Cow position:
Alignm length: 400
Alignm identity: 260
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 254, 225

Conread position: 14-423
Cow position:
Alignm length: 413
Alignm identity: 246
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 85

Conread position: 14-442
Cow position:
Alignm length: 430
Alignm identity: 260
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 61, 66

Conread position: 14-448
Cow position:
Alignm length: 438
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 85

Conread position: 14-456
Cow position:
Alignm length: 447
Alignm identity: 286
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 158, 144

Conread position: 14-471
Cow position:
Alignm length: 460
Alignm identity: 277
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 155, 72

Conread position: 14-480
Cow position:
Alignm length: 470
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 73

Conread position: 14-480
Cow position:
Alignm length: 470
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 74

Conread position: 14-481
Cow position:
Alignm length: 469
Alignm identity: 290
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 313, 326

Conread position: 14-485
Cow position:
Alignm length: 479
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 144

Conread position: 14-487
Cow position:
Alignm length: 475
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 14-491
Cow position:
Alignm length: 482
Alignm identity: 304
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 68, 85

Conread position: 14-492
Cow position:
Alignm length: 482
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 135

Conread position: 14-524
Cow position:
Alignm length: 514
Alignm identity: 300
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 313, 318

Conread position: 14-533
Cow position:
Alignm length: 520
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-534
Cow position:
Alignm length: 523
Alignm identity: 321
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 62, 71

Conread position: 14-534
Cow position:
Alignm length: 523
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 416

Conread position: 14-543
Cow position:
Alignm length: 534
Alignm identity: 332
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 62, 77

Conread position: 14-543
Cow position:
Alignm length: 532
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 172

Conread position: 14-543
Cow position:
Alignm length: 535
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 85

Conread position: 14-544
Cow position:
Alignm length: 534
Alignm identity: 315
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 201, 57

Conread position: 14-544
Cow position:
Alignm length: 532
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 509, 517

Conread position: 14-544
Cow position:
Alignm length: 533
Alignm identity: 326
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 324, 334

Conread position: 14-547
Cow position:
Alignm length: 535
Alignm identity: 320
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 156, 169

Conread position: 14-547
Cow position:
Alignm length: 536
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 397

Conread position: 14-547
Cow position:
Alignm length: 536
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 84

Conread position: 14-547
Cow position:
Alignm length: 537
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 157

Conread position: 14-548
Cow position:
Alignm length: 537
Alignm identity: 320
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 255, 262

Conread position: 14-553
Cow position:
Alignm length: 543
Alignm identity: 334
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 72

Conread position: 14-555
Cow position:
Alignm length: 544
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 71

Conread position: 14-571
Cow position:
Alignm length: 563
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 133

Conread position: 14-571
Cow position:
Alignm length: 563
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 229

Conread position: 14-575
Cow position:
Alignm length: 564
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 15-452
Cow position:
Alignm length: 439
Alignm identity: 268
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 239, 228

Conread position: 18-533
Cow position:
Alignm length: 524
Alignm identity: 321
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 67

Conread position: 20-481
Cow position:
Alignm length: 463
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 331

Conread position: 20-481
Cow position:
Alignm length: 463
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 331

Conread position: 23-462
Cow position:
Alignm length: 441
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 65

Conread position: 26-288
Cow position:
Alignm length: 264
Alignm identity: 173
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 59

Conread position: 26-491
Cow position:
Alignm length: 470
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 73

Conread position: 26-534
Cow position:
Alignm length: 514
Alignm identity: 319
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 50, 59

Conread position: 26-534
Cow position:
Alignm length: 509
Alignm identity: 311
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 26-544
Cow position:
Alignm length: 520
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 388

Conread position: 26-544
Cow position:
Alignm length: 520
Alignm identity: 311
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 462, 480

Conread position: 26-553
Cow position:
Alignm length: 529
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 322

Conread position: 26-553
Cow position:
Alignm length: 529
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 155

Conread position: 26-555
Cow position:
Alignm length: 537
Alignm identity: 328
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 102, 61

Conread position: 26-555
Cow position:
Alignm length: 534
Alignm identity: 322
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 155, 150

Conread position: 26-556
Cow position:
Alignm length: 533
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 46

Conread position: 26-572
Cow position:
Alignm length: 549
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 27-206
Cow position:
Alignm length: 181
Alignm identity: 125
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 141, 126

Conread position: 32-481
Cow position:
Alignm length: 451
Alignm identity: 262
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 379, 383

Conread position: 32-481
Cow position:
Alignm length: 453
Alignm identity: 267
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 146, 159

Conread position: 32-547
Cow position:
Alignm length: 519
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 57

Conread position: 34-471
Cow position:
Alignm length: 438
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 35-543
Cow position:
Alignm length: 513
Alignm identity: 321
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 64

Conread position: 36-555
Cow position:
Alignm length: 522
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 315

Conread position: 37-505
Cow position:
Alignm length: 472
Alignm identity: 282
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 124

Conread position: 56-571
Cow position:
Alignm length: 518
Alignm identity: 312
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 470, 475

Conread position: 81-547
Cow position:
Alignm length: 471
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 102

Conread position: 83-480
Cow position:
Alignm length: 401
Alignm identity: 248
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 105, 87

Conread position: 97-394
Cow position:
Alignm length: 299
Alignm identity: 191
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 223, 11

Conread position: 101-547
Cow position:
Alignm length: 449
Alignm identity: 262
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 11

Conread position: 106-570
Cow position:
Alignm length: 470
Alignm identity: 294
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 64, 77

Conread position: 108-542
Cow position:
Alignm length: 438
Alignm identity: 269
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 135, 145

Conread position: 109-571
Cow position:
Alignm length: 467
Alignm identity: 298
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 144, 52

Conread position: 110-480
Cow position:
Alignm length: 372
Alignm identity: 220
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 367, 363

Conread position: 116-456
Cow position:
Alignm length: 343
Alignm identity: 212
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 61

Conread position: 116-543
Cow position:
Alignm length: 428
Alignm identity: 271
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 119-534
Cow position:
Alignm length: 417
Alignm identity: 252
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 201, 211

Conread position: 182-481
Cow position:
Alignm length: 300
Alignm identity: 186
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 194-477
Cow position:
Alignm length: 285
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 155

Conread position: 287-547
Cow position:
Alignm length: 262
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 40

Show alignments to all cow chromosomes.