Cow genome map
Conread name: | Ss1.1-rpliv0106_m24.5 |
Conread position: | 1-229 |
Cow position: | chr17:22551708-22551480 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 163 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-460 |
Cow position: | chr17:22589630-22589173 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 252, 232 |
Conread position: | 1-471 |
Cow position: | chr17:22551960-22551490 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 243 |
Conread position: | 1-472 |
Cow position: | chr17:22498923-22498461 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 242 |
Conread position: | 1-549 |
Cow position: | chr17:22552884-22552336 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 177, 182 |
Conread position: | 1-555 |
Cow position: | chr17:22590050-22589497 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 84 |
Conread position: | 1-563 |
Cow position: | chr17:22452161-22451600 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 84 |
Conread position: | 1-566 |
Cow position: | chr17:22553136-22552573 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 476, 472 |
Conread position: | 1-571 |
Cow position: | chr17:22552128-22551558 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 175, 182 |
Conread position: | 1-571 |
Cow position: | chr17:22552800-22552230 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 337, 350 |
Conread position: | 1-571 |
Cow position: | chr17:22589966-22589398 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 157 |
Conread position: | 1-571 |
Cow position: | chr17:22590218-22589648 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 348, 339 |
Conread position: | 2-338 |
Cow position: | chr17:22473639-22473977 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 230 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 245, 229 |
Conread position: | 2-571 |
Cow position: | chr17:22452412-22451843 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 168, 181 |
Conread position: | 2-571 |
Cow position: | chr17:22552379-22551810 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 475, 471 |
Conread position: | 3-398 |
Cow position: | chr17:22473556-22473952 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 147 |
Conread position: | 3-493 |
Cow position: | chr17:22499257-22498768 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 146 |
Conread position: | 3-551 |
Cow position: | chr17:22590132-22589585 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 330, 323 |
Conread position: | 3-565 |
Cow position: | chr17:22499089-22498529 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 146 |
Conread position: | 3-575 |
Cow position: | chr17:22589796-22589224 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 246, 235 |
Conread position: | 4-542 |
Cow position: | chr17:22552209-22551671 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 4-547 |
Cow position: | chr17:22499172-22498631 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 154 |
Conread position: | 4-564 |
Cow position: | chr17:22552041-22551482 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 473, 469 |
Conread position: | 11-496 |
Cow position: | chr17:22473480-22473966 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 148 |
Conread position: | 11-555 |
Cow position: | chr17:22589872-22589329 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 493, 474 |
Conread position: | 11-569 |
Cow position: | chr17:22589704-22589152 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 142 |
Conread position: | 12-571 |
Cow position: | chr17:22499332-22498773 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 73 |
Conread position: | 13-471 |
Cow position: | chr17:22473233-22473688 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 234, 30 |
Conread position: | 13-543 |
Cow position: | chr17:22552956-22552426 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 464, 460 |
Conread position: | 13-544 |
Cow position: | chr17:22473398-22473930 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 145 |
Conread position: | 13-551 |
Cow position: | chr17:22552536-22551999 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 86 |
Conread position: | 13-571 |
Cow position: | chr17:22552620-22552062 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 72 |
Conread position: | 13-571 |
Cow position: | chr17:22553040-22552482 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 72 |
Conread position: | 14-524 |
Cow position: | chr17:22452316-22451806 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 51 |
Conread position: | 14-544 |
Cow position: | chr17:22552451-22551921 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 71 |
Conread position: | 14-549 |
Cow position: | chr17:22552283-22551748 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 463, 459 |
Conread position: | 14-550 |
Cow position: | chr17:22452232-22451696 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 140 |
Conread position: | 14-551 |
Cow position: | chr17:22552703-22552167 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 463, 459 |
Conread position: | 14-555 |
Cow position: | chr17:22590289-22589749 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 56 |
Conread position: | 18-571 |
Cow position: | chr17:22473319-22473871 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 543, 525 |
Conread position: | 26-534 |
Cow position: | chr17:41441046-41440538 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 294 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 50, 59 |
Conread position: | 34-524 |
Cow position: | chr17:22499394-22498904 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 296, 303 |
Conread position: | 34-543 |
Cow position: | chr17:22473173-22473676 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 29 |
Conread position: | 47-571 |
Cow position: | chr17:22553174-22552651 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 516, 496 |
Conread position: | 109-571 |
Cow position: | chr17:22473164-22473619 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 39 |
Conread position: | 119-571 |
Cow position: | chr17:22499393-22498942 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 359, 354 |
Conread position: | 249-544 |
Cow position: | chr17:22590306-22590011 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 193 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 84, 77 |
Conread position: | 286-571 |
Cow position: | chr17:22499394-22499110 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 198 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 275, 252 |
Show alignments to all cow chromosomes.