Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-229
Cow position: chr17:22551708-22551480 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-460
Cow position: chr17:22589630-22589173 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 232

Conread position: 1-471
Cow position: chr17:22551960-22551490 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 243

Conread position: 1-472
Cow position: chr17:22498923-22498461 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 242

Conread position: 1-549
Cow position: chr17:22552884-22552336 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 182

Conread position: 1-555
Cow position: chr17:22590050-22589497 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 84

Conread position: 1-563
Cow position: chr17:22452161-22451600 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 84

Conread position: 1-566
Cow position: chr17:22553136-22552573 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 472

Conread position: 1-571
Cow position: chr17:22552128-22551558 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 182

Conread position: 1-571
Cow position: chr17:22552800-22552230 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 350

Conread position: 1-571
Cow position: chr17:22589966-22589398 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 157

Conread position: 1-571
Cow position: chr17:22590218-22589648 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 339

Conread position: 2-338
Cow position: chr17:22473639-22473977 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 230
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 245, 229

Conread position: 2-571
Cow position: chr17:22452412-22451843 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 181

Conread position: 2-571
Cow position: chr17:22552379-22551810 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 475, 471

Conread position: 3-398
Cow position: chr17:22473556-22473952 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 147

Conread position: 3-493
Cow position: chr17:22499257-22498768 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 146

Conread position: 3-551
Cow position: chr17:22590132-22589585 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 323

Conread position: 3-565
Cow position: chr17:22499089-22498529 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 146

Conread position: 3-575
Cow position: chr17:22589796-22589224 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 235

Conread position: 4-542
Cow position: chr17:22552209-22551671 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-547
Cow position: chr17:22499172-22498631 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 154

Conread position: 4-564
Cow position: chr17:22552041-22551482 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 473, 469

Conread position: 11-496
Cow position: chr17:22473480-22473966 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 11-555
Cow position: chr17:22589872-22589329 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 474

Conread position: 11-569
Cow position: chr17:22589704-22589152 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 142

Conread position: 12-571
Cow position: chr17:22499332-22498773 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 73

Conread position: 13-471
Cow position: chr17:22473233-22473688 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 30

Conread position: 13-543
Cow position: chr17:22552956-22552426 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 460

Conread position: 13-544
Cow position: chr17:22473398-22473930 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 145

Conread position: 13-551
Cow position: chr17:22552536-22551999 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 86

Conread position: 13-571
Cow position: chr17:22552620-22552062 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 72

Conread position: 13-571
Cow position: chr17:22553040-22552482 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 72

Conread position: 14-524
Cow position: chr17:22452316-22451806 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 51

Conread position: 14-544
Cow position: chr17:22552451-22551921 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 71

Conread position: 14-549
Cow position: chr17:22552283-22551748 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 459

Conread position: 14-550
Cow position: chr17:22452232-22451696 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 140

Conread position: 14-551
Cow position: chr17:22552703-22552167 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 459

Conread position: 14-555
Cow position: chr17:22590289-22589749 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 56

Conread position: 18-571
Cow position: chr17:22473319-22473871 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 525

Conread position: 26-534
Cow position: chr17:41441046-41440538 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 294
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 59

Conread position: 34-524
Cow position: chr17:22499394-22498904 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 303

Conread position: 34-543
Cow position: chr17:22473173-22473676 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 29

Conread position: 47-571
Cow position: chr17:22553174-22552651 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 516, 496

Conread position: 109-571
Cow position: chr17:22473164-22473619 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 39

Conread position: 119-571
Cow position: chr17:22499393-22498942 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 354

Conread position: 249-544
Cow position: chr17:22590306-22590011 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 193
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 84, 77

Conread position: 286-571
Cow position: chr17:22499394-22499110 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 275, 252

Show alignments to all cow chromosomes.