Cow genome map


           Conread name:
           Ss1.1-rpliv0106_m24.5
        

               Conread position:
               1-366
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               270, 0
               

               Conread position:
               1-544
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 152
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 157
               

               Conread position:
               1-571
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 233
               

               Conread position:
               2-273
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-402
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 232
               

               Conread position:
               2-484
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 229
               

               Conread position:
               2-553
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 79
               

               Conread position:
               2-555
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               2-571
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               341, 328
               

               Conread position:
               2-571
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               475, 471
               

               Conread position:
               3-319
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-460
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 83
               

               Conread position:
               3-571
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               3-571
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 147
               

               Conread position:
               3-575
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               474, 186
               

               Conread position:
               4-459
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-488
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 99
               

               Conread position:
               4-571
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 230
               

               Conread position:
               4-571
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 73
               

               Conread position:
               4-571
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 77
               

               Conread position:
               5-439
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               280
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               357, 321
               

               Conread position:
               5-571
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 47
               

               Conread position:
               6-570
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 228
               

               Conread position:
               8-549
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 0
               

               Conread position:
               11-555
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 52
               

               Conread position:
               11-555
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               412, 424
               

               Conread position:
               11-571
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 70
               

               Conread position:
               11-571
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 142
               

               Conread position:
               11-574
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 223
               

               Conread position:
               12-544
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-555
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 138
               

               Conread position:
               13-293
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               71, 57
               

               Conread position:
               13-415
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               269, 109
               

               Conread position:
               13-441
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 137
               

               Conread position:
               13-464
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-492
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-493
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 16
               

               Conread position:
               13-535
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 65
               

               Conread position:
               13-543
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 169
               

               Conread position:
               13-543
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 77
               

               Conread position:
               13-544
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               464, 104
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 19
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 140
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               535, 508
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 68
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 140
               

               Conread position:
               13-572
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               553, 525
               

               Conread position:
               14-487
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               14-532
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               500, 0
               

               Conread position:
               14-543
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 67
               

               Conread position:
               14-544
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-545
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               14-549
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 85
               

               Conread position:
               14-555
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               14-555
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 224
               

               Conread position:
               14-570
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               552, 529
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               552, 526
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 144
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 55
               

               Conread position:
               15-570
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 5
               

               Conread position:
               17-551
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 184
               

               Conread position:
               19-472
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 214
               

               Conread position:
               19-571
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 219
               

               Conread position:
               19-571
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 140
               

               Conread position:
               26-555
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 205
               

               Conread position:
               30-569
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 133
               

               Conread position:
               33-512
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               309
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               35-575
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 196
               

               Conread position:
               36-570
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 11
               

               Conread position:
               38-571
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 295
               

               Conread position:
               47-542
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 39
               

               Conread position:
               79-547
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 32
               

               Conread position:
               116-570
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 122
               

               Conread position:
               118-571
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               306, 316
               

               Conread position:
               161-487
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               182-571
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               381, 81
               

               Conread position:
               233-542
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 13
               
Show alignments to all cow chromosomes.