Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-366 |
| Cow position: | chr19:43570003-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 1-544 |
| Cow position: | chr19:23614577-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 152 |
| Conread position: | 1-570 |
| Cow position: | chr19:14940209-14940778 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 157 |
| Conread position: | 1-571 |
| Cow position: | chr19:23614325-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 233 |
| Conread position: | 2-273 |
| Cow position: | chr19:14940798-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-402 |
| Cow position: | chr19:20678341-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 232 |
| Conread position: | 2-484 |
| Cow position: | chr19:20635495-20635013 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 229 |
| Conread position: | 2-553 |
| Cow position: | chr19:23649524-23650074 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 2-555 |
| Cow position: | chr19:14959515-14958978 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 2-571 |
| Cow position: | chr19:20677837-20678405 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 328 |
| Conread position: | 2-571 |
| Cow position: | chr19:23649608-23650177 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 471 |
| Conread position: | 3-319 |
| Cow position: | chr19:14948328-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-460 |
| Cow position: | chr19:23650029-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 3-571 |
| Cow position: | chr19:14939960-14940527 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 3-571 |
| Cow position: | chr19:23614495-23615062 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 147 |
| Conread position: | 3-575 |
| Cow position: | chr19:14960336-14959768 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 474, 186 |
| Conread position: | 4-459 |
| Cow position: | chr19:20678259-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-488 |
| Cow position: | chr19:20677671-20678154 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 99 |
| Conread position: | 4-571 |
| Cow position: | chr19:23614160-23614727 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 230 |
| Conread position: | 4-571 |
| Cow position: | chr19:23649358-23649924 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 4-571 |
| Cow position: | chr19:23649442-23650009 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 5-439 |
| Cow position: | chr19:43570083-43569653 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 280 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 357, 321 |
| Conread position: | 5-571 |
| Cow position: | chr19:43570325-43569769 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 47 |
| Conread position: | 6-570 |
| Cow position: | chr19:23614078-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 228 |
| Conread position: | 8-549 |
| Cow position: | chr19:14960415-14959876 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 0 |
| Conread position: | 11-555 |
| Cow position: | chr19:23613831-23614374 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 11-555 |
| Cow position: | chr19:23649281-23649824 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 424 |
| Conread position: | 11-571 |
| Cow position: | chr19:23613579-23614139 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 11-571 |
| Cow position: | chr19:23613999-23614559 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 142 |
| Conread position: | 11-574 |
| Cow position: | chr19:23613915-23614477 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 223 |
| Conread position: | 12-544 |
| Cow position: | chr19:14940304-14940836 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-555 |
| Cow position: | chr19:23614252-23614794 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 138 |
| Conread position: | 13-293 |
| Cow position: | chr19:14959099-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 13-415 |
| Cow position: | chr19:14916028-14916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 269, 109 |
| Conread position: | 13-441 |
| Cow position: | chr19:14940641-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 137 |
| Conread position: | 13-464 |
| Cow position: | chr19:23597262-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-492 |
| Cow position: | chr19:20678100-20678579 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-493 |
| Cow position: | chr19:20678186-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 16 |
| Conread position: | 13-535 |
| Cow position: | chr19:43570159-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 13-543 |
| Cow position: | chr19:14940473-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 13-543 |
| Cow position: | chr19:23649871-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 13-544 |
| Cow position: | chr19:23596929-23597457 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 104 |
| Conread position: | 13-571 |
| Cow position: | chr19:14959670-14959123 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 19 |
| Conread position: | 13-571 |
| Cow position: | chr19:20677596-20678153 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 140 |
| Conread position: | 13-571 |
| Cow position: | chr19:20677764-20678322 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 508 |
| Conread position: | 13-571 |
| Cow position: | chr19:23613413-23613971 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 13-571 |
| Cow position: | chr19:23614421-23614978 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 140 |
| Conread position: | 13-572 |
| Cow position: | chr19:23613749-23614308 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 553, 525 |
| Conread position: | 14-487 |
| Cow position: | chr19:14948484-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 14-532 |
| Cow position: | chr19:14940138-14940658 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 0 |
| Conread position: | 14-543 |
| Cow position: | chr19:14940558-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 14-544 |
| Cow position: | chr19:23597095-23597625 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-545 |
| Cow position: | chr19:23649956-23650487 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 14-549 |
| Cow position: | chr19:14959419-14958899 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 14-555 |
| Cow position: | chr19:23649704-23650244 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 14-555 |
| Cow position: | chr19:43570242-43569704 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 224 |
| Conread position: | 14-570 |
| Cow position: | chr19:14940390-14940946 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 552, 529 |
| Conread position: | 14-571 |
| Cow position: | chr19:14940054-14940611 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 552, 526 |
| Conread position: | 14-571 |
| Cow position: | chr19:20677513-20678070 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 14-571 |
| Cow position: | chr19:23613666-23614222 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 15-570 |
| Cow position: | chr19:43570398-43569854 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 5 |
| Conread position: | 17-551 |
| Cow position: | chr19:23596849-23597379 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 184 |
| Conread position: | 19-472 |
| Cow position: | chr19:14960154-14959706 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 214 |
| Conread position: | 19-571 |
| Cow position: | chr19:20635646-20635095 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 219 |
| Conread position: | 19-571 |
| Cow position: | chr19:20678022-20678574 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 140 |
| Conread position: | 26-555 |
| Cow position: | chr19:23597191-23597720 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 205 |
| Conread position: | 30-569 |
| Cow position: | chr19:14960477-14959941 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 133 |
| Conread position: | 33-512 |
| Cow position: | chr19:14915962-14916438 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 35-575 |
| Cow position: | chr19:23613351-23613890 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 196 |
| Conread position: | 36-570 |
| Cow position: | chr19:20635712-20635179 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 38-571 |
| Cow position: | chr19:20677453-20677986 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 295 |
| Conread position: | 47-542 |
| Cow position: | chr19:14959311-14958821 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 79-547 |
| Cow position: | chr19:20677329-20677792 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 116-570 |
| Cow position: | chr19:14960475-14960023 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 122 |
| Conread position: | 118-571 |
| Cow position: | chr19:23613350-23613803 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 316 |
| Conread position: | 161-487 |
| Cow position: | chr19:23596825-23597148 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 182-571 |
| Cow position: | chr19:14948484-14948096 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 381, 81 |
| Conread position: | 233-542 |
| Cow position: | chr19:23596814-23597119 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 13 |
Show alignments to all cow chromosomes.