Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-544
Cow position: chr2:78754727-78755258 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 74

Conread position: 1-569
Cow position: chr2:78754397-78754947 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 46

Conread position: 1-571
Cow position: chr2:78754967-78755534 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 68

Conread position: 1-571
Cow position: chr2:78755719-78756290 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 149

Conread position: 2-395
Cow position: chr2:82800166-82800553 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 255
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 325, 282

Conread position: 2-472
Cow position: chr2:86465402-86465872 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 299
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 80, 61

Conread position: 2-543
Cow position: chr2:82799662-82800203 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-544
Cow position: chr2:82799746-82800288 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 237

Conread position: 2-571
Cow position: chr2:82799578-82800147 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 517, 504

Conread position: 3-420
Cow position: chr2:86465823-86466238 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 258
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 79, 71

Conread position: 3-510
Cow position: chr2:78754315-78754816 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 126

Conread position: 3-543
Cow position: chr2:78755555-78756094 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 112

Conread position: 3-544
Cow position: chr2:78755889-78756427 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 225

Conread position: 3-571
Cow position: chr2:78754649-78755201 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 41

Conread position: 3-571
Cow position: chr2:78755388-78755953 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 125

Conread position: 3-575
Cow position: chr2:78754885-78755455 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 228

Conread position: 4-315
Cow position: chr2:5874456-5874145 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 10

Conread position: 4-408
Cow position: chr2:86465236-86465640 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 256
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 17

Conread position: 4-481
Cow position: chr2:5874624-5874147 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 308
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 6, 10

Conread position: 4-543
Cow position: chr2:5875044-5874505 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 85

Conread position: 5-278
Cow position: chr2:5874371-5874100 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 75

Conread position: 9-543
Cow position: chr2:5874702-5874169 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 5

Conread position: 13-325
Cow position: chr2:48689478-48689167 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 201
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 74, 0

Conread position: 13-536
Cow position: chr2:78754811-78755334 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 221

Conread position: 13-547
Cow position: chr2:5874783-5874251 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 328
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 154, 169

Conread position: 13-547
Cow position: chr2:5875119-5874587 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 325
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 238, 242

Conread position: 13-548
Cow position: chr2:86465331-86465864 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 334
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 60, 16

Conread position: 14-450
Cow position: chr2:82800010-82800446 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-547
Cow position: chr2:82799506-82800037 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 141

Conread position: 14-555
Cow position: chr2:82799842-82800382 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 71

Conread position: 15-533
Cow position: chr2:78754243-78754755 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 138

Conread position: 19-492
Cow position: chr2:86465671-86466144 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 274
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 422, 418

Conread position: 20-547
Cow position: chr2:86465589-86466113 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 322
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 6

Conread position: 26-409
Cow position: chr2:86465762-86466145 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 240
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 153, 166

Conread position: 26-537
Cow position: chr2:82799938-82800449 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 301

Conread position: 26-575
Cow position: chr2:78754170-78754716 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 133

Conread position: 34-403
Cow position: chr2:48689541-48689173 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 223
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 124, 0

Conread position: 38-544
Cow position: chr2:78754101-78754602 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 66

Conread position: 45-480
Cow position: chr2:82799453-82799888 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 114

Conread position: 45-548
Cow position: chr2:86465109-86465612 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 315
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 118, 108

Conread position: 56-481
Cow position: chr2:5875160-5874735 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 29

Conread position: 95-542
Cow position: chr2:86464988-86465436 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 275
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 11, 151

Conread position: 98-492
Cow position: chr2:86465078-86465472 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 32

Conread position: 147-555
Cow position: chr2:82799470-82799878 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 94

Conread position: 204-543
Cow position: chr2:5875180-5874841 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 218
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 114, 128

Conread position: 217-545
Cow position: chr2:82799457-82799783 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 16

Show alignments to all cow chromosomes.