Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-211
Cow position:
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 88

Conread position: 1-296
Cow position:
Alignm length: 297
Alignm identity: 200
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 168, 152

Conread position: 1-373
Cow position:
Alignm length: 377
Alignm identity: 238
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 167, 158

Conread position: 1-487
Cow position:
Alignm length: 498
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 89

Conread position: 1-492
Cow position:
Alignm length: 496
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 182

Conread position: 1-571
Cow position:
Alignm length: 574
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 67

Conread position: 1-571
Cow position:
Alignm length: 575
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 153

Conread position: 1-571
Cow position:
Alignm length: 574
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 232

Conread position: 1-571
Cow position:
Alignm length: 576
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 229

Conread position: 2-555
Cow position:
Alignm length: 559
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 85

Conread position: 2-555
Cow position:
Alignm length: 558
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 78

Conread position: 2-574
Cow position:
Alignm length: 576
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 181

Conread position: 2-574
Cow position:
Alignm length: 576
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 156

Conread position: 3-296
Cow position:
Alignm length: 294
Alignm identity: 198
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 3-510
Cow position:
Alignm length: 511
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 156

Conread position: 3-544
Cow position:
Alignm length: 544
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 330

Conread position: 3-548
Cow position:
Alignm length: 549
Alignm identity: 326
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 86

Conread position: 3-555
Cow position:
Alignm length: 556
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 103

Conread position: 3-571
Cow position:
Alignm length: 573
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 330

Conread position: 3-575
Cow position:
Alignm length: 578
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 150

Conread position: 3-575
Cow position:
Alignm length: 576
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 230

Conread position: 4-281
Cow position:
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 4-291
Cow position:
Alignm length: 288
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 4-408
Cow position:
Alignm length: 407
Alignm identity: 261
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 307

Conread position: 4-491
Cow position:
Alignm length: 490
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 97

Conread position: 4-531
Cow position:
Alignm length: 533
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 97

Conread position: 4-548
Cow position:
Alignm length: 546
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 154

Conread position: 4-555
Cow position:
Alignm length: 558
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 81

Conread position: 4-570
Cow position:
Alignm length: 570
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 186

Conread position: 4-571
Cow position:
Alignm length: 571
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 229

Conread position: 5-375
Cow position:
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 341

Conread position: 5-460
Cow position:
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 84

Conread position: 5-555
Cow position:
Alignm length: 557
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 233

Conread position: 5-570
Cow position:
Alignm length: 568
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 533

Conread position: 5-570
Cow position:
Alignm length: 568
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 533

Conread position: 5-575
Cow position:
Alignm length: 573
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 539, 520

Conread position: 6-571
Cow position:
Alignm length: 569
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 237

Conread position: 8-571
Cow position:
Alignm length: 567
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 230

Conread position: 11-325
Cow position:
Alignm length: 317
Alignm identity: 213
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 58, 78

Conread position: 11-409
Cow position:
Alignm length: 402
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 75

Conread position: 11-448
Cow position:
Alignm length: 439
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 405

Conread position: 11-575
Cow position:
Alignm length: 568
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 413

Conread position: 12-555
Cow position:
Alignm length: 547
Alignm identity: 312
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 388, 406

Conread position: 12-570
Cow position:
Alignm length: 563
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 227

Conread position: 13-204
Cow position:
Alignm length: 193
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 72

Conread position: 13-314
Cow position:
Alignm length: 305
Alignm identity: 195
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 156, 187

Conread position: 13-458
Cow position:
Alignm length: 449
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 225

Conread position: 13-471
Cow position:
Alignm length: 463
Alignm identity: 288
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 243, 218

Conread position: 13-493
Cow position:
Alignm length: 486
Alignm identity: 306
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 63, 99

Conread position: 13-525
Cow position:
Alignm length: 517
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 13-543
Cow position:
Alignm length: 532
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 329

Conread position: 13-543
Cow position:
Alignm length: 531
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-544
Cow position:
Alignm length: 537
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 76

Conread position: 13-571
Cow position:
Alignm length: 562
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 313

Conread position: 13-571
Cow position:
Alignm length: 566
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 140

Conread position: 13-575
Cow position:
Alignm length: 567
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 57

Conread position: 14-273
Cow position:
Alignm length: 260
Alignm identity: 171
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 14-295
Cow position:
Alignm length: 285
Alignm identity: 192
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 154, 169

Conread position: 14-398
Cow position:
Alignm length: 388
Alignm identity: 236
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 189, 184

Conread position: 14-408
Cow position:
Alignm length: 398
Alignm identity: 246
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 165, 158

Conread position: 14-409
Cow position:
Alignm length: 402
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 56

Conread position: 14-449
Cow position:
Alignm length: 439
Alignm identity: 283
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 311, 135

Conread position: 14-463
Cow position:
Alignm length: 455
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 157

Conread position: 14-464
Cow position:
Alignm length: 452
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 420

Conread position: 14-464
Cow position:
Alignm length: 453
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 217

Conread position: 14-472
Cow position:
Alignm length: 464
Alignm identity: 291
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 90

Conread position: 14-492
Cow position:
Alignm length: 481
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 312

Conread position: 14-493
Cow position:
Alignm length: 486
Alignm identity: 293
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 62, 55

Conread position: 14-524
Cow position:
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 422

Conread position: 14-534
Cow position:
Alignm length: 522
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 420

Conread position: 14-544
Cow position:
Alignm length: 534
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 151

Conread position: 14-553
Cow position:
Alignm length: 542
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 144

Conread position: 14-555
Cow position:
Alignm length: 543
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 92

Conread position: 14-560
Cow position:
Alignm length: 549
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 224

Conread position: 14-569
Cow position:
Alignm length: 557
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 469

Conread position: 14-569
Cow position:
Alignm length: 558
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 469

Conread position: 14-571
Cow position:
Alignm length: 563
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 175

Conread position: 14-571
Cow position:
Alignm length: 561
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 155

Conread position: 14-571
Cow position:
Alignm length: 559
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 552, 526

Conread position: 14-571
Cow position:
Alignm length: 562
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 19

Conread position: 14-571
Cow position:
Alignm length: 564
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 220

Conread position: 14-571
Cow position:
Alignm length: 561
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 419

Conread position: 14-571
Cow position:
Alignm length: 561
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 224

Conread position: 14-571
Cow position:
Alignm length: 560
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 217

Conread position: 14-571
Cow position:
Alignm length: 564
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 90

Conread position: 14-575
Cow position:
Alignm length: 566
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 66

Conread position: 15-376
Cow position:
Alignm length: 368
Alignm identity: 235
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 59

Conread position: 15-551
Cow position:
Alignm length: 555
Alignm identity: 318
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 61, 70

Conread position: 19-532
Cow position:
Alignm length: 523
Alignm identity: 333
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 76, 60

Conread position: 20-571
Cow position:
Alignm length: 558
Alignm identity: 340
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 154

Conread position: 21-407
Cow position:
Alignm length: 395
Alignm identity: 258
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 70, 49

Conread position: 21-464
Cow position:
Alignm length: 447
Alignm identity: 279
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 167, 147

Conread position: 21-570
Cow position:
Alignm length: 553
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 78

Conread position: 25-492
Cow position:
Alignm length: 473
Alignm identity: 291
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 161, 165

Conread position: 26-462
Cow position:
Alignm length: 442
Alignm identity: 282
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 72, 60

Conread position: 26-486
Cow position:
Alignm length: 464
Alignm identity: 292
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 63, 43

Conread position: 26-492
Cow position:
Alignm length: 468
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 229

Conread position: 26-555
Cow position:
Alignm length: 537
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 63

Conread position: 29-457
Cow position:
Alignm length: 430
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 209

Conread position: 29-539
Cow position:
Alignm length: 518
Alignm identity: 318
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 144, 125

Conread position: 29-571
Cow position:
Alignm length: 550
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 162

Conread position: 31-571
Cow position:
Alignm length: 541
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 507, 0

Conread position: 35-555
Cow position:
Alignm length: 522
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 208

Conread position: 38-547
Cow position:
Alignm length: 510
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 500, 0

Conread position: 38-555
Cow position:
Alignm length: 523
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 193

Conread position: 43-492
Cow position:
Alignm length: 454
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 43-543
Cow position:
Alignm length: 505
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 44-543
Cow position:
Alignm length: 506
Alignm identity: 304
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 285, 291

Conread position: 44-555
Cow position:
Alignm length: 514
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 187

Conread position: 50-492
Cow position:
Alignm length: 446
Alignm identity: 266
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 291, 280

Conread position: 82-571
Cow position:
Alignm length: 496
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 33

Conread position: 89-492
Cow position:
Alignm length: 406
Alignm identity: 263
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 12

Conread position: 89-546
Cow position:
Alignm length: 466
Alignm identity: 286
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 16, 8

Conread position: 97-492
Cow position:
Alignm length: 399
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 191, 185

Conread position: 104-568
Cow position:
Alignm length: 469
Alignm identity: 296
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 149, 8

Conread position: 109-575
Cow position:
Alignm length: 473
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 44

Conread position: 129-544
Cow position:
Alignm length: 417
Alignm identity: 262
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 280, 285

Conread position: 166-571
Cow position:
Alignm length: 410
Alignm identity: 256
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 84, 69

Conread position: 178-364
Cow position:
Alignm length: 187
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 200-544
Cow position:
Alignm length: 349
Alignm identity: 215
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 126

Conread position: 205-553
Cow position:
Alignm length: 354
Alignm identity: 229
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 139, 122

Conread position: 205-571
Cow position:
Alignm length: 371
Alignm identity: 236
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 200, 229

Conread position: 331-571
Cow position:
Alignm length: 246
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 36

Show alignments to all cow chromosomes.