Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-222 |
| Cow position: | chr23:24626527-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 1-276 |
| Cow position: | chr23:24654168-24654442 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 1-325 |
| Cow position: | chr23:24535742-24535417 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 1-388 |
| Cow position: | chr23:24639687-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 1-419 |
| Cow position: | chr23:24560503-24560086 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 237 |
| Conread position: | 1-459 |
| Cow position: | chr23:24547111-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-538 |
| Cow position: | chr23:25698605-25698067 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 1-542 |
| Cow position: | chr23:24639351-24639892 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 152 |
| Conread position: | 3-414 |
| Cow position: | chr23:24522599-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 4-338 |
| Cow position: | chr23:25626753-25627088 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 4-414 |
| Cow position: | chr23:25660289-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 4-524 |
| Cow position: | chr23:24522262-24521739 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 254 |
| Conread position: | 4-564 |
| Cow position: | chr23:24522763-24522207 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 150 |
| Conread position: | 4-571 |
| Cow position: | chr23:24639270-24639836 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 5-570 |
| Cow position: | chr23:24547191-24546627 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 148 |
| Conread position: | 10-571 |
| Cow position: | chr23:25626090-25626647 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 444 |
| Conread position: | 13-267 |
| Cow position: | chr23:24522421-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-309 |
| Cow position: | chr23:24626455-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 234, 218 |
| Conread position: | 13-481 |
| Cow position: | chr23:24522670-24522205 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 13-493 |
| Cow position: | chr23:24639615-24640094 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 218 |
| Conread position: | 13-543 |
| Cow position: | chr23:24639531-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 13-544 |
| Cow position: | chr23:24547267-24546736 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 225 |
| Conread position: | 13-569 |
| Cow position: | chr23:25698677-25698122 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 327 |
| Conread position: | 13-575 |
| Cow position: | chr23:25626009-25626571 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 460 |
| Conread position: | 14-280 |
| Cow position: | chr23:25723979-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 14-356 |
| Cow position: | chr23:24639784-24640125 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 229, 217 |
| Conread position: | 14-394 |
| Cow position: | chr23:24626372-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 0 |
| Conread position: | 14-415 |
| Cow position: | chr23:24535813-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 242, 224 |
| Conread position: | 14-488 |
| Cow position: | chr23:24560574-24560102 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 14-505 |
| Cow position: | chr23:25626595-25627087 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 136 |
| Conread position: | 14-532 |
| Cow position: | chr23:25660215-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 14-543 |
| Cow position: | chr23:24639448-24639977 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 14-545 |
| Cow position: | chr23:24560658-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 224 |
| Conread position: | 15-543 |
| Cow position: | chr23:24639197-24639725 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 19-386 |
| Cow position: | chr23:25724058-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 238 |
| Conread position: | 19-443 |
| Cow position: | chr23:24654102-24654520 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 232, 215 |
| Conread position: | 19-536 |
| Cow position: | chr23:24535976-24535459 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 415 |
| Conread position: | 19-571 |
| Cow position: | chr23:24560821-24560269 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 219 |
| Conread position: | 25-281 |
| Cow position: | chr23:24521986-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 220, 5 |
| Conread position: | 29-477 |
| Cow position: | chr23:24626303-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 405 |
| Conread position: | 29-547 |
| Cow position: | chr23:24536050-24535534 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 0 |
| Conread position: | 29-571 |
| Cow position: | chr23:25660146-25660688 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 209 |
| Conread position: | 30-555 |
| Cow position: | chr23:24547334-24546810 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 129 |
| Conread position: | 34-555 |
| Cow position: | chr23:24522815-24522300 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 35-544 |
| Cow position: | chr23:25626535-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 44 |
| Conread position: | 35-569 |
| Cow position: | chr23:24560889-24560355 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 175 |
| Conread position: | 38-492 |
| Cow position: | chr23:24535873-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 205 |
| Conread position: | 38-571 |
| Cow position: | chr23:24560718-24560185 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 200 |
| Conread position: | 43-386 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 196 |
| Conread position: | 56-470 |
| Cow position: | chr23:25724105-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 58-548 |
| Cow position: | chr23:24626251-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 98-571 |
| Cow position: | chr23:24560910-24560437 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 196 |
| Conread position: | 102-532 |
| Cow position: | chr23:25724143-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 112-501 |
| Cow position: | chr23:25660145-25660534 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 112-571 |
| Cow position: | chr23:24536051-24535592 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 428 |
| Conread position: | 115-495 |
| Cow position: | chr23:24654029-24654410 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 193-571 |
| Cow position: | chr23:24522824-24522452 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 345, 31 |
| Conread position: | 217-544 |
| Cow position: | chr23:25625961-25626288 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 218-544 |
| Cow position: | chr23:24639232-24639558 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 222-547 |
| Cow position: | chr23:25724107-25723784 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 225-571 |
| Cow position: | chr23:24536108-24535761 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 267-571 |
| Cow position: | chr23:24639197-24639501 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 273-571 |
| Cow position: | chr23:25660138-25660436 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 221, 234 |
Show alignments to all cow chromosomes.