Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-326 |
| Cow position: | chr28:9290385-9290709 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 77 |
| Conread position: | 1-466 |
| Cow position: | chr28:9253153-9253619 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 1-533 |
| Cow position: | chr28:7757802-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-555 |
| Cow position: | chr28:9289806-9290351 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 73 |
| Conread position: | 1-571 |
| Cow position: | chr28:7757466-7758036 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 1-571 |
| Cow position: | chr28:9252985-9253555 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 537 |
| Conread position: | 3-211 |
| Cow position: | chr28:33210448-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 3-219 |
| Cow position: | chr28:34696384-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 3-285 |
| Cow position: | chr28:7758628-7758910 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 204, 152 |
| Conread position: | 3-318 |
| Cow position: | chr28:34696216-34696531 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 10 |
| Conread position: | 3-462 |
| Cow position: | chr28:11333833-11333380 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 0 |
| Conread position: | 3-544 |
| Cow position: | chr28:9298620-9299156 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 45 |
| Conread position: | 3-548 |
| Cow position: | chr28:9253071-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 3-549 |
| Cow position: | chr28:7757552-7758098 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 231 |
| Conread position: | 3-553 |
| Cow position: | chr28:7758224-7758757 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 3-571 |
| Cow position: | chr28:7757384-7757952 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 3-571 |
| Cow position: | chr28:7757720-7758288 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 431 |
| Conread position: | 4-379 |
| Cow position: | chr28:9299358-9299728 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 253, 212 |
| Conread position: | 4-390 |
| Cow position: | chr28:7810560-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-472 |
| Cow position: | chr28:7810485-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 53 |
| Conread position: | 4-488 |
| Cow position: | chr28:9298703-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 115 |
| Conread position: | 4-534 |
| Cow position: | chr28:11334000-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 4-574 |
| Cow position: | chr28:7810317-7810877 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 223 |
| Conread position: | 4-575 |
| Cow position: | chr28:7757637-7758208 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 562, 534 |
| Conread position: | 5-454 |
| Cow position: | chr28:7758462-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 324 |
| Conread position: | 5-499 |
| Cow position: | chr28:9290224-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 35 |
| Conread position: | 5-523 |
| Cow position: | chr28:34673409-34673927 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 321 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 5-553 |
| Cow position: | chr28:9298955-9299486 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 5-567 |
| Cow position: | chr28:9290142-9290697 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 65 |
| Conread position: | 7-471 |
| Cow position: | chr28:34696137-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 71, 5 |
| Conread position: | 13-345 |
| Cow position: | chr28:33210290-33210623 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 13-421 |
| Cow position: | chr28:34679498-34679098 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 170, 110 |
| Conread position: | 13-505 |
| Cow position: | chr28:9299129-9299604 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 13-542 |
| Cow position: | chr28:9299045-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 13-564 |
| Cow position: | chr28:7810410-7810950 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 128 |
| Conread position: | 13-571 |
| Cow position: | chr28:7756983-7757531 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 13-571 |
| Cow position: | chr28:7810251-7810790 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 41 |
| Conread position: | 13-571 |
| Cow position: | chr28:9252912-9253471 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 13-574 |
| Cow position: | chr28:9252747-9253305 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 140 |
| Conread position: | 14-498 |
| Cow position: | chr28:7758387-7758871 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 392 |
| Conread position: | 14-505 |
| Cow position: | chr28:34679579-34679098 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 14-524 |
| Cow position: | chr28:11333738-11333228 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 14-532 |
| Cow position: | chr28:34695891-34696411 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 15-480 |
| Cow position: | chr28:34695724-34696189 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 233, 225 |
| Conread position: | 15-555 |
| Cow position: | chr28:11334073-11333534 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 516 |
| Conread position: | 15-575 |
| Cow position: | chr28:9252584-9253139 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 18-553 |
| Cow position: | chr28:11334154-11333620 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 18-575 |
| Cow position: | chr28:9298299-9298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 202 |
| Conread position: | 26-295 |
| Cow position: | chr28:33210387-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 26-511 |
| Cow position: | chr28:34696071-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 29-545 |
| Cow position: | chr28:9298561-9299073 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 30-543 |
| Cow position: | chr28:34695991-34696504 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 132, 128 |
| Conread position: | 32-540 |
| Cow position: | chr28:9299218-9299722 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 317 |
| Conread position: | 35-423 |
| Cow position: | chr28:33210228-33210617 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 43, 63 |
| Conread position: | 37-549 |
| Cow position: | chr28:7757334-7757846 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 194 |
| Conread position: | 42-492 |
| Cow position: | chr28:34673362-34673812 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 80-492 |
| Cow position: | chr28:34679597-34679184 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 178, 51 |
| Conread position: | 97-533 |
| Cow position: | chr28:34695890-34696328 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 98-572 |
| Cow position: | chr28:7810252-7810708 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 40 |
| Conread position: | 99-510 |
| Cow position: | chr28:34695724-34696135 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 55 |
| Conread position: | 117-533 |
| Cow position: | chr28:34673353-34673771 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 201, 222 |
| Conread position: | 119-543 |
| Cow position: | chr28:33210228-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 198, 208 |
| Conread position: | 179-544 |
| Cow position: | chr28:11334245-11333880 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 157, 147 |
| Conread position: | 182-520 |
| Cow position: | chr28:7809811-7810143 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 85 |
Show alignments to all cow chromosomes.