Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 77

Conread position: 1-466
Cow position:
Alignm length: 467
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 451, 0

Conread position: 1-533
Cow position:
Alignm length: 533
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-555
Cow position:
Alignm length: 562
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 73

Conread position: 1-571
Cow position:
Alignm length: 573
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 83

Conread position: 1-571
Cow position:
Alignm length: 572
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 565, 537

Conread position: 3-211
Cow position:
Alignm length: 213
Alignm identity: 146
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 72, 78

Conread position: 3-219
Cow position:
Alignm length: 219
Alignm identity: 148
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 73, 96

Conread position: 3-285
Cow position:
Alignm length: 285
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 204, 152

Conread position: 3-318
Cow position:
Alignm length: 317
Alignm identity: 208
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 5, 10

Conread position: 3-462
Cow position:
Alignm length: 460
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 0

Conread position: 3-544
Cow position:
Alignm length: 543
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 45

Conread position: 3-548
Cow position:
Alignm length: 547
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 81

Conread position: 3-549
Cow position:
Alignm length: 548
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 231

Conread position: 3-553
Cow position:
Alignm length: 553
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 82

Conread position: 3-571
Cow position:
Alignm length: 571
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 66

Conread position: 3-571
Cow position:
Alignm length: 572
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 431

Conread position: 4-379
Cow position:
Alignm length: 377
Alignm identity: 244
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 253, 212

Conread position: 4-390
Cow position:
Alignm length: 387
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-472
Cow position:
Alignm length: 471
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 53

Conread position: 4-488
Cow position:
Alignm length: 486
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 115

Conread position: 4-534
Cow position:
Alignm length: 535
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 75

Conread position: 4-574
Cow position:
Alignm length: 573
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 223

Conread position: 4-575
Cow position:
Alignm length: 573
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 562, 534

Conread position: 5-454
Cow position:
Alignm length: 451
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 324

Conread position: 5-499
Cow position:
Alignm length: 496
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 35

Conread position: 5-523
Cow position:
Alignm length: 523
Alignm identity: 321
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 75, 83

Conread position: 5-553
Cow position:
Alignm length: 549
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-567
Cow position:
Alignm length: 566
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 65

Conread position: 7-471
Cow position:
Alignm length: 467
Alignm identity: 294
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 71, 5

Conread position: 13-345
Cow position:
Alignm length: 334
Alignm identity: 214
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 271, 0

Conread position: 13-421
Cow position:
Alignm length: 414
Alignm identity: 273
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 170, 110

Conread position: 13-505
Cow position:
Alignm length: 493
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 13-542
Cow position:
Alignm length: 530
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 13-564
Cow position:
Alignm length: 553
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 128

Conread position: 13-571
Cow position:
Alignm length: 563
Alignm identity: 342
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 43

Conread position: 13-571
Cow position:
Alignm length: 561
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 41

Conread position: 13-571
Cow position:
Alignm length: 563
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 53

Conread position: 13-574
Cow position:
Alignm length: 564
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 140

Conread position: 14-498
Cow position:
Alignm length: 488
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 392

Conread position: 14-505
Cow position:
Alignm length: 503
Alignm identity: 328
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 73, 30

Conread position: 14-524
Cow position:
Alignm length: 520
Alignm identity: 327
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 70, 61

Conread position: 14-532
Cow position:
Alignm length: 525
Alignm identity: 322
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 98, 89

Conread position: 15-480
Cow position:
Alignm length: 469
Alignm identity: 284
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 233, 225

Conread position: 15-555
Cow position:
Alignm length: 542
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 511, 516

Conread position: 15-575
Cow position:
Alignm length: 565
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 73

Conread position: 18-553
Cow position:
Alignm length: 538
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 62

Conread position: 18-575
Cow position:
Alignm length: 564
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 202

Conread position: 26-295
Cow position:
Alignm length: 272
Alignm identity: 181
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 39, 62

Conread position: 26-511
Cow position:
Alignm length: 488
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 73

Conread position: 29-545
Cow position:
Alignm length: 520
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 57

Conread position: 30-543
Cow position:
Alignm length: 518
Alignm identity: 322
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 132, 128

Conread position: 32-540
Cow position:
Alignm length: 510
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 317

Conread position: 35-423
Cow position:
Alignm length: 391
Alignm identity: 253
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 43, 63

Conread position: 37-549
Cow position:
Alignm length: 514
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 194

Conread position: 42-492
Cow position:
Alignm length: 455
Alignm identity: 284
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 33, 46

Conread position: 80-492
Cow position:
Alignm length: 420
Alignm identity: 267
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 178, 51

Conread position: 97-533
Cow position:
Alignm length: 443
Alignm identity: 274
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 71, 62

Conread position: 98-572
Cow position:
Alignm length: 477
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 40

Conread position: 99-510
Cow position:
Alignm length: 415
Alignm identity: 246
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 71, 55

Conread position: 117-533
Cow position:
Alignm length: 423
Alignm identity: 277
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 201, 222

Conread position: 119-543
Cow position:
Alignm length: 428
Alignm identity: 265
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 198, 208

Conread position: 179-544
Cow position:
Alignm length: 368
Alignm identity: 226
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 157, 147

Conread position: 182-520
Cow position:
Alignm length: 341
Alignm identity: 212
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 76, 85

Show alignments to all cow chromosomes.