Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-337 |
| Cow position: | chr3:68027394-68027730 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 1-372 |
| Cow position: | chr3:68045987-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 244, 230 |
| Conread position: | 1-544 |
| Cow position: | chr3:62722107-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 232 |
| Conread position: | 1-559 |
| Cow position: | chr3:62722191-62721635 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 157 |
| Conread position: | 2-555 |
| Cow position: | chr3:68027059-68027611 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 232 |
| Conread position: | 2-555 |
| Cow position: | chr3:68045652-68046204 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 232 |
| Conread position: | 3-322 |
| Cow position: | chr3:62743144-62743463 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-505 |
| Cow position: | chr3:62742498-62742996 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 143 |
| Conread position: | 3-547 |
| Cow position: | chr3:62722273-62721731 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 150 |
| Conread position: | 3-572 |
| Cow position: | chr3:62742914-62743461 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 4-571 |
| Cow position: | chr3:62742664-62743207 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 64 |
| Conread position: | 4-571 |
| Cow position: | chr3:68045738-68046304 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 13-405 |
| Cow position: | chr3:77350850-77350471 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 153, 141 |
| Conread position: | 13-471 |
| Cow position: | chr3:62742257-62742711 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 13-480 |
| Cow position: | chr3:62743075-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 299 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 308, 41 |
| Conread position: | 13-560 |
| Cow position: | chr3:68027238-68027783 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 217 |
| Conread position: | 13-575 |
| Cow position: | chr3:77351262-77350709 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 351 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 14-458 |
| Cow position: | chr3:77351011-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 14-533 |
| Cow position: | chr3:68045832-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 14-571 |
| Cow position: | chr3:77351177-77350632 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 73 |
| Conread position: | 25-571 |
| Cow position: | chr3:68045593-68046137 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 6 |
| Conread position: | 27-571 |
| Cow position: | chr3:68027000-68027543 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 37-571 |
| Cow position: | chr3:62722323-62721790 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 117 |
| Conread position: | 56-504 |
| Cow position: | chr3:62743034-62743476 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 80-547 |
| Cow position: | chr3:68045562-68046027 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 151 |
| Conread position: | 80-561 |
| Cow position: | chr3:68026969-68027451 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 247, 256 |
| Conread position: | 98-555 |
| Cow position: | chr3:62742258-62742710 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 108-532 |
| Cow position: | chr3:68026834-68027255 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 60, 20 |
Show alignments to all cow chromosomes.