Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-420 |
| Cow position: | chr6:49396595-49397019 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 338, 350 |
| Conread position: | 2-427 |
| Cow position: | chr6:49429119-49429542 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 3-543 |
| Cow position: | chr6:49428700-49429240 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 317 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 4-222 |
| Cow position: | chr6:49341213-49341431 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 5-478 |
| Cow position: | chr6:49362393-49362854 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 157, 145 |
| Conread position: | 5-480 |
| Cow position: | chr6:49396263-49396738 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 176, 171 |
| Conread position: | 11-325 |
| Cow position: | chr6:49341136-49341449 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 223 |
| Conread position: | 11-547 |
| Cow position: | chr6:49340632-49341166 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 11-555 |
| Cow position: | chr6:49396353-49396896 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 515, 520 |
| Conread position: | 12-572 |
| Cow position: | chr6:49340225-49340773 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 13-492 |
| Cow position: | chr6:49340970-49341448 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 0 |
| Conread position: | 13-571 |
| Cow position: | chr6:49340718-49341276 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 13-572 |
| Cow position: | chr6:49340466-49341025 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 218 |
| Conread position: | 14-482 |
| Cow position: | chr6:49396524-49396992 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 241, 253 |
| Conread position: | 14-544 |
| Cow position: | chr6:49340887-49341417 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-553 |
| Cow position: | chr6:49395693-49396228 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 165, 60 |
| Conread position: | 14-555 |
| Cow position: | chr6:49396194-49396728 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 37 |
| Conread position: | 14-571 |
| Cow position: | chr6:49340803-49341360 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 19-574 |
| Cow position: | chr6:49340388-49340942 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 0 |
| Conread position: | 26-486 |
| Cow position: | chr6:49362330-49362778 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 26-543 |
| Cow position: | chr6:49428975-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 26-547 |
| Cow position: | chr6:49428387-49428906 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 308, 325 |
| Conread position: | 26-547 |
| Cow position: | chr6:49428555-49429074 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 301 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 143, 157 |
| Conread position: | 31-547 |
| Cow position: | chr6:49362095-49362597 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 32-480 |
| Cow position: | chr6:49428224-49428673 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 6, 57 |
Show alignments to all cow chromosomes.