Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-171 |
| Cow position: | chr7:1440108-1440278 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 1-260 |
| Cow position: | chr7:1438467-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 161, 152 |
| Conread position: | 1-363 |
| Cow position: | chr7:42878638-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 1-544 |
| Cow position: | chr7:42878890-42878349 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 158 |
| Conread position: | 1-555 |
| Cow position: | chr7:1438133-1438684 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 70 |
| Conread position: | 1-555 |
| Cow position: | chr7:42879226-42878673 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 1-570 |
| Cow position: | chr7:1439520-1440089 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 1-571 |
| Cow position: | chr7:42878974-42878405 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 0 |
| Conread position: | 2-408 |
| Cow position: | chr7:1439858-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 117 |
| Conread position: | 2-550 |
| Cow position: | chr7:42878805-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 533, 0 |
| Conread position: | 2-571 |
| Cow position: | chr7:42879141-42878573 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 409 |
| Conread position: | 3-326 |
| Cow position: | chr7:18390466-18390789 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-426 |
| Cow position: | chr7:1438301-1438724 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-453 |
| Cow position: | chr7:11600883-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 347 |
| Conread position: | 3-544 |
| Cow position: | chr7:1014655-1015196 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 96 |
| Conread position: | 3-571 |
| Cow position: | chr7:11601135-11600567 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 425 |
| Conread position: | 4-254 |
| Cow position: | chr7:1440027-1440277 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 149 |
| Conread position: | 4-336 |
| Cow position: | chr7:11600798-11600466 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 155 |
| Conread position: | 4-346 |
| Cow position: | chr7:1438386-1438728 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 4-492 |
| Cow position: | chr7:8243104-8243592 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 88 |
| Conread position: | 4-500 |
| Cow position: | chr7:18390299-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 227 |
| Conread position: | 4-501 |
| Cow position: | chr7:1439777-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 82 |
| Conread position: | 4-571 |
| Cow position: | chr7:1439694-1440258 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 5-465 |
| Cow position: | chr7:1014993-1015453 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 229 |
| Conread position: | 5-536 |
| Cow position: | chr7:11600965-11600433 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 346 |
| Conread position: | 5-571 |
| Cow position: | chr7:3179919-3180484 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 229 |
| Conread position: | 6-493 |
| Cow position: | chr7:8243610-8244093 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 166, 8 |
| Conread position: | 6-571 |
| Cow position: | chr7:8325209-8325773 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 7 |
| Conread position: | 7-493 |
| Cow position: | chr7:8325293-8325779 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 90 |
| Conread position: | 8-512 |
| Cow position: | chr7:1438222-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 10-472 |
| Cow position: | chr7:8325884-8326341 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 173, 143 |
| Conread position: | 10-486 |
| Cow position: | chr7:8325464-8325940 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 149 |
| Conread position: | 10-555 |
| Cow position: | chr7:8277823-8278367 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 157 |
| Conread position: | 10-571 |
| Cow position: | chr7:1439445-1440006 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 10-571 |
| Cow position: | chr7:8277403-8277964 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 143 |
| Conread position: | 12-325 |
| Cow position: | chr7:8325802-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 255, 222 |
| Conread position: | 12-487 |
| Cow position: | chr7:8243196-8243670 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 184 |
| Conread position: | 12-492 |
| Cow position: | chr7:8242860-8243340 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 12-492 |
| Cow position: | chr7:8277909-8278389 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 58 |
| Conread position: | 12-543 |
| Cow position: | chr7:18390139-18390670 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 141 |
| Conread position: | 12-571 |
| Cow position: | chr7:3180262-3180818 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 12-571 |
| Cow position: | chr7:42879047-42878488 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 13-408 |
| Cow position: | chr7:8243700-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 159, 146 |
| Conread position: | 13-429 |
| Cow position: | chr7:18390392-18390808 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 13-472 |
| Cow position: | chr7:8325383-8325842 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 13-481 |
| Cow position: | chr7:8324879-8325347 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 13-493 |
| Cow position: | chr7:8325551-8326031 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 169 |
| Conread position: | 13-551 |
| Cow position: | chr7:3179759-3180296 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 56 |
| Conread position: | 13-571 |
| Cow position: | chr7:1014335-1014885 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 345 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 410, 316 |
| Conread position: | 13-571 |
| Cow position: | chr7:3180179-3180737 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 421 |
| Conread position: | 13-574 |
| Cow position: | chr7:11601209-11600649 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 13-575 |
| Cow position: | chr7:1014833-1015395 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 320 |
| Conread position: | 13-575 |
| Cow position: | chr7:1014917-1015481 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 78 |
| Conread position: | 14-492 |
| Cow position: | chr7:8277323-8277801 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 220 |
| Conread position: | 14-492 |
| Cow position: | chr7:11434753-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 310 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 168, 145 |
| Conread position: | 14-498 |
| Cow position: | chr7:28846570-28847054 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 14-549 |
| Cow position: | chr7:1014750-1015285 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 168 |
| Conread position: | 14-571 |
| Cow position: | chr7:3180012-3180567 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 14-571 |
| Cow position: | chr7:3180096-3180653 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 133 |
| Conread position: | 14-571 |
| Cow position: | chr7:18389973-18390529 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 14-571 |
| Cow position: | chr7:18390225-18390782 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr7:11434668-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 251, 138 |
| Conread position: | 19-569 |
| Cow position: | chr7:1014257-1014801 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 303, 313 |
| Conread position: | 20-180 |
| Cow position: | chr7:1438570-1438730 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-566 |
| Cow position: | chr7:42879458-42878915 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 22-571 |
| Cow position: | chr7:8277499-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 23-409 |
| Cow position: | chr7:8325729-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 26-475 |
| Cow position: | chr7:8243545-8243994 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 127 |
| Conread position: | 26-554 |
| Cow position: | chr7:8278091-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 29-571 |
| Cow position: | chr7:11434824-11434287 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 29-571 |
| Cow position: | chr7:42879368-42878824 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 32-492 |
| Cow position: | chr7:8277257-8277717 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 34-555 |
| Cow position: | chr7:42879277-42878757 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 488 |
| Conread position: | 35-492 |
| Cow position: | chr7:8324817-8325274 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 37-493 |
| Cow position: | chr7:8324735-8325191 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 37-494 |
| Cow position: | chr7:1438085-1438540 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 40-492 |
| Cow position: | chr7:8242804-8243256 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 103-574 |
| Cow position: | chr7:1437986-1438452 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 116-492 |
| Cow position: | chr7:8324730-8325106 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 120-575 |
| Cow position: | chr7:18389995-18390450 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 201, 212 |
| Conread position: | 174-571 |
| Cow position: | chr7:1439441-1439839 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 147 |
| Conread position: | 181-569 |
| Cow position: | chr7:3179675-3180063 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 200-493 |
| Cow position: | chr7:8277257-8277550 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 209-571 |
| Cow position: | chr7:8242805-8243167 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 233-492 |
| Cow position: | chr7:11601242-11600982 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 179 |
| Conread position: | 289-571 |
| Cow position: | chr7:8324735-8325017 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 41 |
Show alignments to all cow chromosomes.