Cow genome map


           Conread name:
           Ss1.1-rpliv0106_m24.5
        

               Conread position:
               1-171
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 68
               

               Conread position:
               1-260
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               161, 152
               

               Conread position:
               1-363
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 84
               

               Conread position:
               1-544
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 158
               

               Conread position:
               1-555
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 70
               

               Conread position:
               1-555
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 86
               

               Conread position:
               1-570
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 68
               

               Conread position:
               1-571
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               542, 0
               

               Conread position:
               2-408
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 117
               

               Conread position:
               2-550
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               533, 0
               

               Conread position:
               2-571
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               418, 409
               

               Conread position:
               3-326
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-426
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-453
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 347
               

               Conread position:
               3-544
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 96
               

               Conread position:
               3-571
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 425
               

               Conread position:
               4-254
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 149
               

               Conread position:
               4-336
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 155
               

               Conread position:
               4-346
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 80
               

               Conread position:
               4-492
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 88
               

               Conread position:
               4-500
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 227
               

               Conread position:
               4-501
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 82
               

               Conread position:
               4-571
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 66
               

               Conread position:
               5-465
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 229
               

               Conread position:
               5-536
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               323, 346
               

               Conread position:
               5-571
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 229
               

               Conread position:
               6-493
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               166, 8
               

               Conread position:
               6-571
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 7
               

               Conread position:
               7-493
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 90
               

               Conread position:
               8-512
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 78
               

               Conread position:
               10-472
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               173, 143
               

               Conread position:
               10-486
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 149
               

               Conread position:
               10-555
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 157
               

               Conread position:
               10-571
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 75
               

               Conread position:
               10-571
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 143
               

               Conread position:
               12-325
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               255, 222
               

               Conread position:
               12-487
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 184
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 87
               

               Conread position:
               12-492
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 58
               

               Conread position:
               12-543
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 141
               

               Conread position:
               12-571
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 169
               

               Conread position:
               12-571
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 73
               

               Conread position:
               13-408
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               159, 146
               

               Conread position:
               13-429
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 68
               

               Conread position:
               13-472
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 86
               

               Conread position:
               13-481
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 61
               

               Conread position:
               13-493
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 169
               

               Conread position:
               13-551
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 56
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               345
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               410, 316
               

               Conread position:
               13-571
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               410, 421
               

               Conread position:
               13-574
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 146
               

               Conread position:
               13-575
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 320
               

               Conread position:
               13-575
               

               Cow position:
               
               

               Alignm length:
               567
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 78
               

               Conread position:
               14-492
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 220
               

               Conread position:
               14-492
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               310
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               168, 145
               

               Conread position:
               14-498
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               64, 85
               

               Conread position:
               14-549
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 168
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 67
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 133
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 73
               

               Conread position:
               14-571
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-414
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               251, 138
               

               Conread position:
               19-569
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               342
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               303, 313
               

               Conread position:
               20-180
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-566
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 7
               

               Conread position:
               22-571
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 145
               

               Conread position:
               23-409
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 76
               

               Conread position:
               26-475
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 127
               

               Conread position:
               26-554
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               344
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               59, 49
               

               Conread position:
               29-571
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               349
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               12, 47
               

               Conread position:
               29-571
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               32-492
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 47
               

               Conread position:
               34-555
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               510, 488
               

               Conread position:
               35-492
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 39
               

               Conread position:
               37-493
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               37-494
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               40-492
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 34
               

               Conread position:
               103-574
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               91, 61
               

               Conread position:
               116-492
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               250
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               67, 52
               

               Conread position:
               120-575
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               296
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               201, 212
               

               Conread position:
               174-571
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 147
               

               Conread position:
               181-569
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               16, 12
               

               Conread position:
               200-493
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               68, 52
               

               Conread position:
               209-571
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               57, 42
               

               Conread position:
               233-492
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               13, 179
               

               Conread position:
               289-571
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               55, 41
               
Show alignments to all cow chromosomes.