Cow genome map
Conread name: | Ss1.1-rpliv0106_m24.5 |
Conread position: | 1-274 |
Cow position: | chr8:55581460-55581733 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 185 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 9, 14 |
Conread position: | 1-571 |
Cow position: | chr8:46816263-46816832 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 149 |
Conread position: | 1-571 |
Cow position: | chr8:48407244-48406674 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 168, 157 |
Conread position: | 1-575 |
Cow position: | chr8:45201488-45202056 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 80 |
Conread position: | 2-555 |
Cow position: | chr8:55581041-55581593 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 337, 324 |
Conread position: | 3-553 |
Cow position: | chr8:48406906-48406357 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 193, 186 |
Conread position: | 4-469 |
Cow position: | chr8:55581295-55581760 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 302 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 82, 66 |
Conread position: | 4-570 |
Cow position: | chr8:48406989-48406423 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 154 |
Conread position: | 5-354 |
Cow position: | chr8:46817023-46817372 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 76 |
Conread position: | 5-553 |
Cow position: | chr8:45201240-45201787 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 538, 0 |
Conread position: | 5-570 |
Cow position: | chr8:46816519-46817084 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 85 |
Conread position: | 5-571 |
Cow position: | chr8:46816015-46816581 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 315, 319 |
Conread position: | 5-571 |
Cow position: | chr8:46816351-46816916 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 242, 229 |
Conread position: | 5-572 |
Cow position: | chr8:45201156-45201723 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 79 |
Conread position: | 5-574 |
Cow position: | chr8:55580960-55581528 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 242, 226 |
Conread position: | 11-555 |
Cow position: | chr8:46816777-46817320 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 195 |
Conread position: | 11-571 |
Cow position: | chr8:45200910-45201470 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 241, 223 |
Conread position: | 12-440 |
Cow position: | chr8:46816946-46817374 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 222 |
Conread position: | 13-314 |
Cow position: | chr8:48406560-48406259 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 189 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 244, 217 |
Conread position: | 13-324 |
Cow position: | chr8:48406644-48406333 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 202 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 13-443 |
Cow position: | chr8:6958018-6957591 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 263 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 152, 140 |
Conread position: | 13-492 |
Cow position: | chr8:48407148-48406669 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 193 |
Conread position: | 13-492 |
Cow position: | chr8:55581220-55581699 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 137 |
Conread position: | 13-525 |
Cow position: | chr8:46816863-46817375 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 13-544 |
Cow position: | chr8:48407568-48407037 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 414, 401 |
Conread position: | 13-563 |
Cow position: | chr8:48407316-48406767 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 145 |
Conread position: | 13-571 |
Cow position: | chr8:45201080-45201637 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 232, 218 |
Conread position: | 13-571 |
Cow position: | chr8:45201416-45201973 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 71 |
Conread position: | 13-571 |
Cow position: | chr8:46816443-46817001 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 140 |
Conread position: | 13-571 |
Cow position: | chr8:46816695-46817252 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 134 |
Conread position: | 13-572 |
Cow position: | chr8:46816191-46816750 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 61 |
Conread position: | 14-342 |
Cow position: | chr8:55581389-55581717 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 14-498 |
Cow position: | chr8:55580885-55581369 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 140 |
Conread position: | 14-542 |
Cow position: | chr8:55581137-55581665 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 231, 220 |
Conread position: | 14-545 |
Cow position: | chr8:48406811-48406280 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 334 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 50, 66 |
Conread position: | 14-547 |
Cow position: | chr8:46816108-46816639 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 233, 226 |
Conread position: | 14-555 |
Cow position: | chr8:46816612-46817152 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 232, 217 |
Conread position: | 14-571 |
Cow position: | chr8:45201333-45201889 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 529, 0 |
Conread position: | 16-566 |
Cow position: | chr8:45200999-45201547 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 522, 0 |
Conread position: | 17-572 |
Cow position: | chr8:46815940-46816498 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 140 |
Conread position: | 18-551 |
Cow position: | chr8:55580805-55581337 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 29 |
Conread position: | 18-570 |
Cow position: | chr8:48407647-48407095 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 61 |
Conread position: | 34-459 |
Cow position: | chr8:48406707-48406280 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 278 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 224, 205 |
Conread position: | 35-571 |
Cow position: | chr8:55580737-55581274 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 97 |
Conread position: | 80-575 |
Cow position: | chr8:45200811-45201305 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 67 |
Conread position: | 140-572 |
Cow position: | chr8:45200787-45201219 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 93 |
Conread position: | 189-544 |
Cow position: | chr8:45200365-45200723 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 226 |
Alignm E-value: | 1e-20 |
Alignm gaps (pig, cow): | 170, 137 |
Conread position: | 225-408 |
Cow position: | chr8:6958058-6957875 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 128 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 27, 13 |
Show alignments to all cow chromosomes.