Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-274
Cow position: chr8:55581460-55581733 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 14

Conread position: 1-571
Cow position: chr8:46816263-46816832 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 149

Conread position: 1-571
Cow position: chr8:48407244-48406674 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 157

Conread position: 1-575
Cow position: chr8:45201488-45202056 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 80

Conread position: 2-555
Cow position: chr8:55581041-55581593 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 324

Conread position: 3-553
Cow position: chr8:48406906-48406357 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 186

Conread position: 4-469
Cow position: chr8:55581295-55581760 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 302
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 82, 66

Conread position: 4-570
Cow position: chr8:48406989-48406423 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 154

Conread position: 5-354
Cow position: chr8:46817023-46817372 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 76

Conread position: 5-553
Cow position: chr8:45201240-45201787 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 0

Conread position: 5-570
Cow position: chr8:46816519-46817084 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 85

Conread position: 5-571
Cow position: chr8:46816015-46816581 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 319

Conread position: 5-571
Cow position: chr8:46816351-46816916 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 229

Conread position: 5-572
Cow position: chr8:45201156-45201723 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 79

Conread position: 5-574
Cow position: chr8:55580960-55581528 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 226

Conread position: 11-555
Cow position: chr8:46816777-46817320 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 195

Conread position: 11-571
Cow position: chr8:45200910-45201470 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 223

Conread position: 12-440
Cow position: chr8:46816946-46817374 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 222

Conread position: 13-314
Cow position: chr8:48406560-48406259 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 244, 217

Conread position: 13-324
Cow position: chr8:48406644-48406333 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 202
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 13-443
Cow position: chr8:6958018-6957591 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 263
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 152, 140

Conread position: 13-492
Cow position: chr8:48407148-48406669 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 193

Conread position: 13-492
Cow position: chr8:55581220-55581699 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 137

Conread position: 13-525
Cow position: chr8:46816863-46817375 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-544
Cow position: chr8:48407568-48407037 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 401

Conread position: 13-563
Cow position: chr8:48407316-48406767 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 145

Conread position: 13-571
Cow position: chr8:45201080-45201637 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 218

Conread position: 13-571
Cow position: chr8:45201416-45201973 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 71

Conread position: 13-571
Cow position: chr8:46816443-46817001 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 140

Conread position: 13-571
Cow position: chr8:46816695-46817252 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 134

Conread position: 13-572
Cow position: chr8:46816191-46816750 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 61

Conread position: 14-342
Cow position: chr8:55581389-55581717 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-498
Cow position: chr8:55580885-55581369 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 140

Conread position: 14-542
Cow position: chr8:55581137-55581665 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 220

Conread position: 14-545
Cow position: chr8:48406811-48406280 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 334
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 66

Conread position: 14-547
Cow position: chr8:46816108-46816639 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 226

Conread position: 14-555
Cow position: chr8:46816612-46817152 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 217

Conread position: 14-571
Cow position: chr8:45201333-45201889 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 529, 0

Conread position: 16-566
Cow position: chr8:45200999-45201547 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 522, 0

Conread position: 17-572
Cow position: chr8:46815940-46816498 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 140

Conread position: 18-551
Cow position: chr8:55580805-55581337 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 29

Conread position: 18-570
Cow position: chr8:48407647-48407095 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 61

Conread position: 34-459
Cow position: chr8:48406707-48406280 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 278
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 224, 205

Conread position: 35-571
Cow position: chr8:55580737-55581274 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 97

Conread position: 80-575
Cow position: chr8:45200811-45201305 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 67

Conread position: 140-572
Cow position: chr8:45200787-45201219 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 93

Conread position: 189-544
Cow position: chr8:45200365-45200723 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 226
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 170, 137

Conread position: 225-408
Cow position: chr8:6958058-6957875 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 13

Show alignments to all cow chromosomes.