Cow genome map

Conread name: Ss1.1-rpliv0106_m24.5

Conread position: 1-144
Cow position:
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 0

Conread position: 1-536
Cow position:
Alignm length: 537
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 148

Conread position: 1-551
Cow position:
Alignm length: 554
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 90

Conread position: 1-556
Cow position:
Alignm length: 558
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 237

Conread position: 1-571
Cow position:
Alignm length: 573
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 350

Conread position: 3-543
Cow position:
Alignm length: 544
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 82

Conread position: 3-571
Cow position:
Alignm length: 572
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 230

Conread position: 3-572
Cow position:
Alignm length: 573
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 151

Conread position: 3-572
Cow position:
Alignm length: 571
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 432

Conread position: 4-230
Cow position:
Alignm length: 231
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 87

Conread position: 4-480
Cow position:
Alignm length: 480
Alignm identity: 293
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 76, 87

Conread position: 4-544
Cow position:
Alignm length: 544
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 230

Conread position: 5-409
Cow position:
Alignm length: 408
Alignm identity: 266
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 69, 94

Conread position: 5-542
Cow position:
Alignm length: 542
Alignm identity: 319
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 472, 468

Conread position: 5-544
Cow position:
Alignm length: 542
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 82

Conread position: 5-555
Cow position:
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 80

Conread position: 5-571
Cow position:
Alignm length: 569
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 233

Conread position: 11-544
Cow position:
Alignm length: 535
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 462

Conread position: 11-570
Cow position:
Alignm length: 566
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 11-571
Cow position:
Alignm length: 563
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 462

Conread position: 12-228
Cow position:
Alignm length: 217
Alignm identity: 157
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 209, 0

Conread position: 12-408
Cow position:
Alignm length: 403
Alignm identity: 256
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 85, 65

Conread position: 13-305
Cow position:
Alignm length: 293
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-396
Cow position:
Alignm length: 385
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 76

Conread position: 13-471
Cow position:
Alignm length: 462
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 170

Conread position: 13-555
Cow position:
Alignm length: 544
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 146

Conread position: 13-555
Cow position:
Alignm length: 544
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 460

Conread position: 13-571
Cow position:
Alignm length: 561
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 140

Conread position: 13-573
Cow position:
Alignm length: 567
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 145

Conread position: 13-575
Cow position:
Alignm length: 568
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 145

Conread position: 14-571
Cow position:
Alignm length: 561
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 224

Conread position: 14-574
Cow position:
Alignm length: 562
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 139

Conread position: 20-406
Cow position:
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 65

Conread position: 22-571
Cow position:
Alignm length: 555
Alignm identity: 340
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 68, 57

Conread position: 26-480
Cow position:
Alignm length: 458
Alignm identity: 277
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 44, 65

Conread position: 29-399
Cow position:
Alignm length: 373
Alignm identity: 224
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 32-466
Cow position:
Alignm length: 439
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 129

Conread position: 50-464
Cow position:
Alignm length: 417
Alignm identity: 256
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 198, 183

Conread position: 97-533
Cow position:
Alignm length: 437
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 99-570
Cow position:
Alignm length: 475
Alignm identity: 300
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 21

Conread position: 99-571
Cow position:
Alignm length: 476
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 29

Conread position: 134-547
Cow position:
Alignm length: 417
Alignm identity: 261
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 49

Conread position: 141-571
Cow position:
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 41

Conread position: 181-493
Cow position:
Alignm length: 313
Alignm identity: 201
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 160, 0

Conread position: 192-544
Cow position:
Alignm length: 355
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 140

Conread position: 229-570
Cow position:
Alignm length: 344
Alignm identity: 209
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 332, 314

Show alignments to all cow chromosomes.