Cow genome map
| Conread name: | Ss1.1-rpliv0106_m24.5 |
| Conread position: | 1-144 |
| Cow position: | chrX:25310444-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 1-536 |
| Cow position: | chrX:25324697-25324166 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 148 |
| Conread position: | 1-551 |
| Cow position: | chrX:25324865-25324316 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 90 |
| Conread position: | 1-556 |
| Cow position: | chrX:29045210-29044656 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 237 |
| Conread position: | 1-571 |
| Cow position: | chrX:25309940-25310509 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 350 |
| Conread position: | 3-543 |
| Cow position: | chrX:25325535-25324995 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 3-571 |
| Cow position: | chrX:25325367-25324799 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 230 |
| Conread position: | 3-572 |
| Cow position: | chrX:25309774-25310343 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 3-572 |
| Cow position: | chrX:25309858-25310426 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 432 |
| Conread position: | 4-230 |
| Cow position: | chrX:29045606-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 4-480 |
| Cow position: | chrX:13826727-13826251 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 4-544 |
| Cow position: | chrX:25310027-25310567 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 230 |
| Conread position: | 5-409 |
| Cow position: | chrX:12627325-12627727 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 69, 94 |
| Conread position: | 5-542 |
| Cow position: | chrX:13826810-13826271 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 472, 468 |
| Conread position: | 5-544 |
| Cow position: | chrX:25325281-25324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 5-555 |
| Cow position: | chrX:25324777-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 5-571 |
| Cow position: | chrX:25325029-25324464 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 233 |
| Conread position: | 11-544 |
| Cow position: | chrX:25325107-25324574 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 462 |
| Conread position: | 11-570 |
| Cow position: | chrX:29045683-29045145 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 11-571 |
| Cow position: | chrX:25325611-25325052 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 462 |
| Conread position: | 12-228 |
| Cow position: | chrX:25310371-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 12-408 |
| Cow position: | chrX:12627666-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 13-305 |
| Cow position: | chrX:29044946-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-396 |
| Cow position: | chrX:25310204-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 13-471 |
| Cow position: | chrX:25310120-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 170 |
| Conread position: | 13-555 |
| Cow position: | chrX:25325441-25324900 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 13-555 |
| Cow position: | chrX:29045282-29044741 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 460 |
| Conread position: | 13-571 |
| Cow position: | chrX:25324937-25324379 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 140 |
| Conread position: | 13-573 |
| Cow position: | chrX:25309700-25310260 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 13-575 |
| Cow position: | chrX:25325189-25324627 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 145 |
| Conread position: | 14-571 |
| Cow position: | chrX:25325776-25325220 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 224 |
| Conread position: | 14-574 |
| Cow position: | chrX:25325692-25325133 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 139 |
| Conread position: | 20-406 |
| Cow position: | chrX:29045758-29045372 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 22-571 |
| Cow position: | chrX:12627509-12628056 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 340 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 57 |
| Conread position: | 26-480 |
| Cow position: | chrX:13826873-13826419 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 277 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 29-399 |
| Cow position: | chrX:14181314-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 32-466 |
| Cow position: | chrX:29045830-29045398 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 50-464 |
| Cow position: | chrX:13826933-13826519 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 198, 183 |
| Conread position: | 97-533 |
| Cow position: | chrX:29045849-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-570 |
| Cow position: | chrX:25325859-25325389 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 300 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 99-571 |
| Cow position: | chrX:29045361-29044892 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 134-547 |
| Cow position: | chrX:13826933-13826522 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 141-571 |
| Cow position: | chrX:25309660-25310090 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 181-493 |
| Cow position: | chrX:12627333-12627644 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 192-544 |
| Cow position: | chrX:29045838-29045486 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 140 |
| Conread position: | 229-570 |
| Cow position: | chrX:25325897-25325556 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 332, 314 |
Show alignments to all cow chromosomes.