Cow genome map
| Conread name: | Ss1.1-rpliv0118_i2.5 |
| Conread position: | 34-276 |
| Cow position: | chr3:31321733-31321491 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 35-274 |
| Cow position: | chr3:62896715-62896956 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 40-253 |
| Cow position: | chr3:35030371-35030598 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 40-267 |
| Cow position: | chr3:33469261-33469495 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 41-274 |
| Cow position: | chr3:27674316-27674559 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 88, 197 |
| Conread position: | 41-339 |
| Cow position: | chr3:43316843-43317157 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-258 |
| Cow position: | chr3:72006668-72006896 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 42-267 |
| Cow position: | chr3:26532602-26532841 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 62 |
| Conread position: | 42-273 |
| Cow position: | chr3:4691217-4690965 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 42-273 |
| Cow position: | chr3:11278811-11278573 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 42, 167 |
| Conread position: | 42-274 |
| Cow position: | chr3:24909191-24908947 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 42, 242 |
| Conread position: | 42-274 |
| Cow position: | chr3:38255040-38254803 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 42-274 |
| Cow position: | chr3:72376634-72376400 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 42-311 |
| Cow position: | chr3:45615731-45615453 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 43-259 |
| Cow position: | chr3:47691375-47691150 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 43-267 |
| Cow position: | chr3:322462-322701 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 43-267 |
| Cow position: | chr3:16716433-16716664 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 41, 197 |
| Conread position: | 43-274 |
| Cow position: | chr3:5420643-5420886 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 84, 241 |
| Conread position: | 43-274 |
| Cow position: | chr3:22083889-22084132 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 43-274 |
| Cow position: | chr3:55129753-55129512 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 195 |
| Conread position: | 43-293 |
| Cow position: | chr3:21026008-21026273 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 43-311 |
| Cow position: | chr3:64426897-64427182 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 44-268 |
| Cow position: | chr3:29802211-29801973 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 45-262 |
| Cow position: | chr3:22867569-22867797 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 47-267 |
| Cow position: | chr3:3715067-3714837 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 51-280 |
| Cow position: | chr3:49165017-49165254 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 53-260 |
| Cow position: | chr3:27090800-27091018 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 53-274 |
| Cow position: | chr3:77548206-77547976 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 69-274 |
| Cow position: | chr3:56919447-56919225 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 73-274 |
| Cow position: | chr3:24682120-24682331 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 106-281 |
| Cow position: | chr3:64678768-64678585 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 25 |
Show alignments to all cow chromosomes.