Cow genome map
| Conread name: | Ss1.1-rpliv0118_i2.5 |
| Conread position: | 39-243 |
| Cow position: | chrX:39463759-39463975 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 182 |
| Conread position: | 39-262 |
| Cow position: | chrX:24232167-24231936 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 40-267 |
| Cow position: | chrX:42380556-42380794 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 41-269 |
| Cow position: | chrX:25405085-25405327 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 41-270 |
| Cow position: | chrX:12102679-12102918 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 41-270 |
| Cow position: | chrX:15306587-15306825 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 41-270 |
| Cow position: | chrX:25282207-25282451 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 41-280 |
| Cow position: | chrX:8108054-8107801 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 86, 188 |
| Conread position: | 42-253 |
| Cow position: | chrX:23218354-23218135 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 42-268 |
| Cow position: | chrX:1527683-1527908 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 42-268 |
| Cow position: | chrX:17158834-17159070 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 42-269 |
| Cow position: | chrX:23032756-23032518 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 42-277 |
| Cow position: | chrX:21191139-21190898 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 43-274 |
| Cow position: | chrX:17610171-17610415 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 44-311 |
| Cow position: | chrX:31804170-31803887 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 45-269 |
| Cow position: | chrX:22330282-22330505 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 57 |
| Conread position: | 51-258 |
| Cow position: | chrX:25738339-25738118 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 33, 153 |
| Conread position: | 53-274 |
| Cow position: | chrX:28666685-28666917 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 144 |
| Conread position: | 54-268 |
| Cow position: | chrX:23974170-23974391 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 54-269 |
| Cow position: | chrX:20733847-20733620 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 54-274 |
| Cow position: | chrX:5667766-5667999 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 57-268 |
| Cow position: | chrX:37105466-37105243 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 58-312 |
| Cow position: | chrX:27001223-27000966 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 60-268 |
| Cow position: | chrX:4326415-4326635 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 66-269 |
| Cow position: | chrX:42954701-42954485 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 70-268 |
| Cow position: | chrX:13138925-13139125 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 87-245 |
| Cow position: | chrX:19211851-19212020 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 88-274 |
| Cow position: | chrX:1449430-1449234 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 40, 104 |
Show alignments to all cow chromosomes.