Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-283 |
| Cow position: | chr17:22552674-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 1-294 |
| Cow position: | chr17:22590008-22589716 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 2-272 |
| Cow position: | chr17:22551749-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 2-283 |
| Cow position: | chr17:22552337-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 4-279 |
| Cow position: | chr17:22451948-22451674 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 5-283 |
| Cow position: | chr17:22499297-22499020 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 198, 127 |
| Conread position: | 5-285 |
| Cow position: | chr17:22590256-22589977 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 5-299 |
| Cow position: | chr17:22552166-22551875 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 7-257 |
| Cow position: | chr17:22498791-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 7-258 |
| Cow position: | chr17:22473686-22473937 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 7-281 |
| Cow position: | chr17:22499379-22499107 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 7-283 |
| Cow position: | chr17:22473266-22473541 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 196, 111 |
| Conread position: | 7-283 |
| Cow position: | chr17:22589834-22589560 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 7-284 |
| Cow position: | chr17:22551828-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-284 |
| Cow position: | chr17:22553172-22552896 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 7-285 |
| Cow position: | chr17:22473350-22473627 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-285 |
| Cow position: | chr17:22498875-22498598 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 7-285 |
| Cow position: | chr17:22552752-22552475 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 7-287 |
| Cow position: | chr17:22589582-22589303 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 7-288 |
| Cow position: | chr17:22473434-22473714 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 7-288 |
| Cow position: | chr17:22552500-22552220 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 123, 134 |
| Conread position: | 7-293 |
| Cow position: | chr17:22551996-22551711 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-293 |
| Cow position: | chr17:22589750-22589465 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-294 |
| Cow position: | chr17:22452113-22451827 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 7-299 |
| Cow position: | chr17:22552584-22552293 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 8-277 |
| Cow position: | chr17:22452364-22452096 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 99 |
| Conread position: | 8-283 |
| Cow position: | chr17:22590085-22589811 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 8-285 |
| Cow position: | chr17:22452028-22451752 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 8-293 |
| Cow position: | chr17:22590169-22589885 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 8-304 |
| Cow position: | chr17:22552247-22551952 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 13-292 |
| Cow position: | chr17:22552830-22552552 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 15-293 |
| Cow position: | chr17:22552996-22552719 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 23-293 |
| Cow position: | chr17:22551897-22551627 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 42-284 |
| Cow position: | chr17:22589462-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 48-287 |
| Cow position: | chr17:22590297-22590059 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 55-281 |
| Cow position: | chr17:22499163-22498939 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 55-285 |
| Cow position: | chr17:22452401-22452172 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 162, 83 |
| Conread position: | 64-285 |
| Cow position: | chr17:22473659-22473879 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.