Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-283 |
| Cow position: | chr19:20635454-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-285 |
| Cow position: | chr19:23649733-23650016 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 1-288 |
| Cow position: | chr19:20677626-20677912 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 2-277 |
| Cow position: | chr19:14940084-14940358 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 130, 116 |
| Conread position: | 4-248 |
| Cow position: | chr19:14959066-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 4-277 |
| Cow position: | chr19:14940674-14940946 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 5-285 |
| Cow position: | chr19:14960292-14960015 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 5-288 |
| Cow position: | chr19:14960042-14959762 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 5-288 |
| Cow position: | chr19:43570209-43569927 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 6-283 |
| Cow position: | chr19:14940508-14940783 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 6-283 |
| Cow position: | chr19:14960207-14959934 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 208, 56 |
| Conread position: | 7-252 |
| Cow position: | chr19:14959552-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 126, 109 |
| Conread position: | 7-271 |
| Cow position: | chr19:14940593-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 7-276 |
| Cow position: | chr19:23614121-23614389 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 7-278 |
| Cow position: | chr19:14940341-14940611 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-279 |
| Cow position: | chr19:23614457-23614728 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-279 |
| Cow position: | chr19:23649907-23650178 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 7-279 |
| Cow position: | chr19:43569955-43569688 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 7-280 |
| Cow position: | chr19:23614625-23614897 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 7-283 |
| Cow position: | chr19:14940257-14940532 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 7-283 |
| Cow position: | chr19:20678220-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 7-283 |
| Cow position: | chr19:23596881-23597153 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 7-285 |
| Cow position: | chr19:14948449-14948173 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-285 |
| Cow position: | chr19:14960124-14959847 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 7-285 |
| Cow position: | chr19:14960374-14960099 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 7-285 |
| Cow position: | chr19:20635364-20635087 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 7-285 |
| Cow position: | chr19:20678136-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 7-285 |
| Cow position: | chr19:20678304-20678581 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 7-285 |
| Cow position: | chr19:23597298-23597575 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 7-285 |
| Cow position: | chr19:23613617-23613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 7-285 |
| Cow position: | chr19:23613701-23613978 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 211, 115 |
| Conread position: | 7-285 |
| Cow position: | chr19:23614037-23614314 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 7-285 |
| Cow position: | chr19:23614205-23614482 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 7-285 |
| Cow position: | chr19:23614541-23614818 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 7-285 |
| Cow position: | chr19:23649487-23649764 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 196, 125 |
| Conread position: | 7-285 |
| Cow position: | chr19:23649823-23650100 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 131, 121 |
| Conread position: | 7-286 |
| Cow position: | chr19:23614373-23614651 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 7-286 |
| Cow position: | chr19:23650159-23650437 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 7-288 |
| Cow position: | chr19:23613449-23613729 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 7-288 |
| Cow position: | chr19:43570123-43569843 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 7-289 |
| Cow position: | chr19:20635700-20635419 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 7-289 |
| Cow position: | chr19:20677716-20677998 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 279, 125 |
| Conread position: | 7-292 |
| Cow position: | chr19:14940005-14940289 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 8-279 |
| Cow position: | chr19:43570038-43569768 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 8-283 |
| Cow position: | chr19:23597047-23597321 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 8-283 |
| Cow position: | chr19:23597383-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 8-285 |
| Cow position: | chr19:20635531-20635255 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 126 |
| Conread position: | 8-285 |
| Cow position: | chr19:23613954-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 110 |
| Conread position: | 8-285 |
| Cow position: | chr19:23649320-23649596 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 127 |
| Conread position: | 8-287 |
| Cow position: | chr19:23614290-23614568 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 10-298 |
| Cow position: | chr19:14948363-14948077 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 122, 113 |
| Conread position: | 11-285 |
| Cow position: | chr19:14959137-14958870 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 14-253 |
| Cow position: | chr19:23597473-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 120 |
| Conread position: | 14-285 |
| Cow position: | chr19:23597137-23597407 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 14-288 |
| Cow position: | chr19:43570358-43570095 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 204, 80 |
| Conread position: | 16-285 |
| Cow position: | chr19:23650000-23650268 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 17-285 |
| Cow position: | chr19:14960448-14960181 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 17-296 |
| Cow position: | chr19:43570278-43570004 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 205, 26 |
| Conread position: | 46-284 |
| Cow position: | chr19:14959679-14959444 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 47-285 |
| Cow position: | chr19:23649443-23649680 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 47-288 |
| Cow position: | chr19:20635576-20635336 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 179, 85 |
| Conread position: | 48-296 |
| Cow position: | chr19:14948492-14948247 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 50-278 |
| Cow position: | chr19:23613409-23613635 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 87, 5 |
| Conread position: | 63-285 |
| Cow position: | chr19:20677940-20678161 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 68-283 |
| Cow position: | chr19:23614854-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 53, 69 |
Show alignments to all cow chromosomes.