Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-283 |
| Cow position: | chr22:12431814-12431534 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 141, 7 |
| Conread position: | 1-283 |
| Cow position: | chr22:12475876-12475595 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 134, 118 |
| Conread position: | 1-283 |
| Cow position: | chr22:12499551-12499832 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 203, 131 |
| Conread position: | 1-287 |
| Cow position: | chr22:12431311-12431026 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 2-293 |
| Cow position: | chr22:12418933-12418644 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 4-283 |
| Cow position: | chr22:11640870-11641147 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 4-292 |
| Cow position: | chr22:11641038-11641325 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 5-283 |
| Cow position: | chr22:12458595-12458318 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 5-285 |
| Cow position: | chr22:12385571-12385290 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 6-279 |
| Cow position: | chr22:12399494-12399222 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 7-201 |
| Cow position: | chr22:11666714-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 7-201 |
| Cow position: | chr22:11701452-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 7-250 |
| Cow position: | chr22:12475534-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 7-250 |
| Cow position: | chr22:12499725-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 7-253 |
| Cow position: | chr22:11641209-11641454 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 7-279 |
| Cow position: | chr22:12430969-12430698 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 7-282 |
| Cow position: | chr22:12458089-12457815 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-283 |
| Cow position: | chr22:12399073-12398798 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 7-283 |
| Cow position: | chr22:12399241-12398966 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 7-283 |
| Cow position: | chr22:12399325-12399050 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 7-283 |
| Cow position: | chr22:12399577-12399302 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-283 |
| Cow position: | chr22:12431641-12431367 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 231, 109 |
| Conread position: | 7-283 |
| Cow position: | chr22:12499641-12499916 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 210, 112 |
| Conread position: | 7-284 |
| Cow position: | chr22:12476206-12475930 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 7-284 |
| Cow position: | chr22:12499053-12499329 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 7-285 |
| Cow position: | chr22:12399409-12399132 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 7-285 |
| Cow position: | chr22:12419012-12418735 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 125, 116 |
| Conread position: | 7-285 |
| Cow position: | chr22:12431389-12431112 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-285 |
| Cow position: | chr22:12432145-12431868 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 7-285 |
| Cow position: | chr22:12475618-12475341 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 7-285 |
| Cow position: | chr22:12498885-12499162 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 7-285 |
| Cow position: | chr22:14430165-14430442 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 7-285 |
| Cow position: | chr22:46654196-46654473 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 7-287 |
| Cow position: | chr22:12430885-12430606 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-287 |
| Cow position: | chr22:46654364-46654643 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 7-292 |
| Cow position: | chr22:12385399-12385115 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 7-292 |
| Cow position: | chr22:12399829-12399545 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 7-292 |
| Cow position: | chr22:12431893-12431609 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 7-292 |
| Cow position: | chr22:12432397-12432113 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 123, 112 |
| Conread position: | 7-292 |
| Cow position: | chr22:12476038-12475754 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-295 |
| Cow position: | chr22:12431053-12430766 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 8-274 |
| Cow position: | chr22:12498970-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 8-278 |
| Cow position: | chr22:12458424-12458155 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 8-285 |
| Cow position: | chr22:11701369-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 8-285 |
| Cow position: | chr22:12385230-12384954 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 8-285 |
| Cow position: | chr22:12458172-12457896 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 8-285 |
| Cow position: | chr22:12499390-12499666 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 126, 110 |
| Conread position: | 8-287 |
| Cow position: | chr22:12458256-12457978 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 8-302 |
| Cow position: | chr22:11640790-11641081 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 11-296 |
| Cow position: | chr22:12385481-12385196 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 14-291 |
| Cow position: | chr22:12499312-12499588 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 14-294 |
| Cow position: | chr22:12431466-12431187 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 15-283 |
| Cow position: | chr22:14429837-14430104 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 17-274 |
| Cow position: | chr22:12399735-12399479 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 17-285 |
| Cow position: | chr22:46654038-46654305 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 50-279 |
| Cow position: | chr22:12385694-12385466 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 56-283 |
| Cow position: | chr22:12458460-12458234 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 56-287 |
| Cow position: | chr22:12499522-12499752 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 146, 67 |
| Conread position: | 57-286 |
| Cow position: | chr22:12419315-12419087 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 66 |
| Conread position: | 63-292 |
| Cow position: | chr22:12476234-12476006 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 63-298 |
| Cow position: | chr22:12458621-12458387 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 56 |
| Conread position: | 68-289 |
| Cow position: | chr22:14430394-14430615 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 72 |
| Conread position: | 80-285 |
| Cow position: | chr22:12419023-12418819 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 43 |
Show alignments to all cow chromosomes.