Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-278 |
| Cow position: | chr25:36801635-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-284 |
| Cow position: | chr25:36800723-36801005 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 1-285 |
| Cow position: | chr25:22235921-22236204 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-285 |
| Cow position: | chr25:23420475-23420758 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 1-285 |
| Cow position: | chr25:33157297-33157014 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 1-285 |
| Cow position: | chr25:34447198-34447481 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 1-293 |
| Cow position: | chr25:33298655-33298946 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 2-285 |
| Cow position: | chr25:36800472-36800754 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 4-278 |
| Cow position: | chr25:33299498-33299771 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 4-284 |
| Cow position: | chr25:33298910-33299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 4-287 |
| Cow position: | chr25:33299330-33299612 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 134 |
| Conread position: | 5-288 |
| Cow position: | chr25:34770028-34769746 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 7-277 |
| Cow position: | chr25:36800897-36801166 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 7-277 |
| Cow position: | chr25:36801065-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 112, 130 |
| Conread position: | 7-278 |
| Cow position: | chr25:33305388-33305119 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-283 |
| Cow position: | chr25:23420565-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 130, 116 |
| Conread position: | 7-283 |
| Cow position: | chr25:34732594-34732319 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 7-283 |
| Cow position: | chr25:34769606-34769331 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 7-284 |
| Cow position: | chr25:33298745-33299021 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-284 |
| Cow position: | chr25:33299165-33299441 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 7-285 |
| Cow position: | chr25:33127732-33128009 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 7-285 |
| Cow position: | chr25:33127816-33128093 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 7-285 |
| Cow position: | chr25:36800981-36801258 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 7-288 |
| Cow position: | chr25:34769774-34769494 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 120, 111 |
| Conread position: | 7-290 |
| Cow position: | chr25:34769522-34769240 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 7-292 |
| Cow position: | chr25:33306121-33305834 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 119 |
| Conread position: | 7-292 |
| Cow position: | chr25:34447120-34447404 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 7-293 |
| Cow position: | chr25:33305866-33305587 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 120, 44 |
| Conread position: | 8-277 |
| Cow position: | chr25:33298998-33299266 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 8-278 |
| Cow position: | chr25:36800814-36801083 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 8-283 |
| Cow position: | chr25:33157122-33156848 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 8-283 |
| Cow position: | chr25:33298578-33298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 194, 115 |
| Conread position: | 8-283 |
| Cow position: | chr25:34447457-34447729 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 8-284 |
| Cow position: | chr25:33145113-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 8-284 |
| Cow position: | chr25:33299082-33299357 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 127 |
| Conread position: | 8-285 |
| Cow position: | chr25:34447373-34447649 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 8-285 |
| Cow position: | chr25:34769689-34769413 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 8-285 |
| Cow position: | chr25:34770109-34769833 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 8-286 |
| Cow position: | chr25:22235844-22236121 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 8-293 |
| Cow position: | chr25:33305783-33305503 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 8-293 |
| Cow position: | chr25:36801558-36801842 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 10-283 |
| Cow position: | chr25:23420316-23420588 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 12-285 |
| Cow position: | chr25:23420402-23420674 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 14-287 |
| Cow position: | chr25:326518-326790 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 14-288 |
| Cow position: | chr25:33299592-33299860 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 188, 105 |
| Conread position: | 15-277 |
| Cow position: | chr25:34447296-34447557 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 15-285 |
| Cow position: | chr25:414753-414489 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 17-283 |
| Cow position: | chr25:326947-327212 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 102 |
| Conread position: | 20-255 |
| Cow position: | chr25:327035-327268 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 47-284 |
| Cow position: | chr25:36801345-36801581 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 50-285 |
| Cow position: | chr25:34770151-34769917 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 172, 85 |
| Conread position: | 55-287 |
| Cow position: | chr25:33299465-33299696 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 56-285 |
| Cow position: | chr25:33145077-33145305 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 59-284 |
| Cow position: | chr25:33298546-33298769 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 79-284 |
| Cow position: | chr25:36800633-36800837 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 94-284 |
| Cow position: | chr25:23420316-23420505 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 29 |
Show alignments to all cow chromosomes.