Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-262 |
| Cow position: | chr28:7810683-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 2-278 |
| Cow position: | chr28:7757425-7757700 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 2-278 |
| Cow position: | chr28:9253028-9253303 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 50 |
| Conread position: | 2-285 |
| Cow position: | chr28:7757845-7758127 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 2-285 |
| Cow position: | chr28:9290261-9290541 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 6-241 |
| Cow position: | chr28:9253368-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 7-278 |
| Cow position: | chr28:7758506-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 7-283 |
| Cow position: | chr28:7757766-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 7-283 |
| Cow position: | chr28:9253285-9253560 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 7-284 |
| Cow position: | chr28:7758018-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 7-284 |
| Cow position: | chr28:7810362-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 7-285 |
| Cow position: | chr28:9290350-9290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 7-292 |
| Cow position: | chr28:7757514-7757798 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 120, 137 |
| Conread position: | 7-292 |
| Cow position: | chr28:9253201-9253485 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 111, 130 |
| Conread position: | 7-293 |
| Cow position: | chr28:7758422-7758707 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 134, 112 |
| Conread position: | 7-298 |
| Cow position: | chr28:7810605-7810893 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 8-278 |
| Cow position: | chr28:7757683-7757952 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 8-285 |
| Cow position: | chr28:9298666-9298940 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 10-293 |
| Cow position: | chr28:9252952-9253234 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 37 |
| Conread position: | 12-262 |
| Cow position: | chr28:7810283-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 13-285 |
| Cow position: | chr28:7757352-7757623 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 13-285 |
| Cow position: | chr28:33210248-33210519 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 120, 104 |
| Conread position: | 14-285 |
| Cow position: | chr28:33210333-33210604 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 119 |
| Conread position: | 15-194 |
| Cow position: | chr28:9299006-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 17-285 |
| Cow position: | chr28:11334113-11333846 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 17-292 |
| Cow position: | chr28:34673463-34673737 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 215, 110 |
| Conread position: | 25-283 |
| Cow position: | chr28:9290120-9290373 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 47-278 |
| Cow position: | chr28:9299194-9299421 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 23 |
| Conread position: | 75-283 |
| Cow position: | chr28:34673353-34673560 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 97-293 |
| Cow position: | chr28:7810284-7810479 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 41 |
Show alignments to all cow chromosomes.