Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-240 |
| Cow position: | chr7:42878512-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 1-287 |
| Cow position: | chr7:3179873-3180158 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 4-285 |
| Cow position: | chr7:42879013-42878733 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 5-284 |
| Cow position: | chr7:42879264-42878986 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 7-253 |
| Cow position: | chr7:1014371-1014616 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 7-262 |
| Cow position: | chr7:11601173-11600919 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 7-278 |
| Cow position: | chr7:1439484-1439757 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-279 |
| Cow position: | chr7:1439905-1440175 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 7-279 |
| Cow position: | chr7:11600837-11600566 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 7-283 |
| Cow position: | chr7:1439988-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 7-283 |
| Cow position: | chr7:3180383-3180658 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 57, 52 |
| Conread position: | 7-283 |
| Cow position: | chr7:11601005-11600730 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 7-284 |
| Cow position: | chr7:3180131-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 7-284 |
| Cow position: | chr7:8278030-8278306 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 196, 130 |
| Conread position: | 7-285 |
| Cow position: | chr7:1014869-1015146 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 7-285 |
| Cow position: | chr7:1015121-1015398 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 124, 105 |
| Conread position: | 7-285 |
| Cow position: | chr7:8243233-8243509 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 7-285 |
| Cow position: | chr7:8324831-8325108 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 196, 130 |
| Conread position: | 7-285 |
| Cow position: | chr7:18390344-18390621 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 209, 116 |
| Conread position: | 7-285 |
| Cow position: | chr7:18390428-18390705 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 112 |
| Conread position: | 7-285 |
| Cow position: | chr7:42878590-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 7-286 |
| Cow position: | chr7:11600753-11600475 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 7-293 |
| Cow position: | chr7:3180551-3180834 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 7-293 |
| Cow position: | chr7:42878674-42878389 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 8-276 |
| Cow position: | chr7:1014954-1015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 114 |
| Conread position: | 8-283 |
| Cow position: | chr7:3180048-3180322 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 8-284 |
| Cow position: | chr7:18390513-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 8-284 |
| Cow position: | chr7:42878841-42878566 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 8-285 |
| Cow position: | chr7:3180216-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 8-285 |
| Cow position: | chr7:3180300-3180576 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 8-285 |
| Cow position: | chr7:3180468-3180744 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 8-285 |
| Cow position: | chr7:11601088-11600812 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 11-283 |
| Cow position: | chr7:8243488-8243759 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 11-287 |
| Cow position: | chr7:42879342-42879067 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 13-285 |
| Cow position: | chr7:1014791-1015062 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 13-298 |
| Cow position: | chr7:42879088-42878804 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 15-285 |
| Cow position: | chr7:8277954-8278223 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 17-284 |
| Cow position: | chr7:18390186-18390452 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 82 |
| Conread position: | 17-287 |
| Cow position: | chr7:42878748-42878479 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 48-285 |
| Cow position: | chr7:18390133-18390369 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 84 |
| Conread position: | 53-285 |
| Cow position: | chr7:8325381-8325612 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 150, 64 |
| Conread position: | 55-278 |
| Cow position: | chr7:3179759-3179981 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 55-283 |
| Cow position: | chr7:1014335-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 55-285 |
| Cow position: | chr7:8277910-8278139 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 94 |
| Conread position: | 55-287 |
| Cow position: | chr7:8243700-8243931 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 56-285 |
| Cow position: | chr7:8325048-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 147, 63 |
| Conread position: | 56-285 |
| Cow position: | chr7:11434508-11434280 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 62 |
| Conread position: | 58-287 |
| Cow position: | chr7:1014668-1014896 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 63-285 |
| Cow position: | chr7:11600865-11600644 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 63-288 |
| Cow position: | chr7:11601201-11600977 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 64-285 |
| Cow position: | chr7:1014260-1014480 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 66-293 |
| Cow position: | chr7:42879371-42879145 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 68-285 |
| Cow position: | chr7:8325732-8325948 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.