Cow genome map
| Conread name: | Ss1.1-rpliv0127_b7.5 |
| Conread position: | 1-286 |
| Cow position: | chrX:25325579-25325295 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 2-283 |
| Cow position: | chrX:13826939-13826659 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 140, 109 |
| Conread position: | 2-283 |
| Cow position: | chrX:25309899-25310179 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 2-293 |
| Cow position: | chrX:25309731-25310021 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 117 |
| Conread position: | 6-279 |
| Cow position: | chrX:25325070-25324798 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 6-283 |
| Cow position: | chrX:25325742-25325466 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 6-286 |
| Cow position: | chrX:25324566-25324287 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 6-288 |
| Cow position: | chrX:25325238-25324957 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 198, 135 |
| Conread position: | 7-181 |
| Cow position: | chrX:25310408-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 7-238 |
| Cow position: | chrX:29045645-29045415 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 7-285 |
| Cow position: | chrX:25324649-25324372 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 7-285 |
| Cow position: | chrX:25325153-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 7-287 |
| Cow position: | chrX:25325321-25325042 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 7-292 |
| Cow position: | chrX:25325405-25325121 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 7-293 |
| Cow position: | chrX:25324901-25324616 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 7-293 |
| Cow position: | chrX:29044994-29044709 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-294 |
| Cow position: | chrX:25309988-25310274 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 130, 110 |
| Conread position: | 7-304 |
| Cow position: | chrX:25325489-25325193 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 8-265 |
| Cow position: | chrX:25310325-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 8-270 |
| Cow position: | chrX:29044909-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 8-293 |
| Cow position: | chrX:29045245-29044961 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 8-293 |
| Cow position: | chrX:29045329-29045045 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 13-279 |
| Cow position: | chrX:29045723-29045458 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 13-293 |
| Cow position: | chrX:25324727-25324448 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 13-294 |
| Cow position: | chrX:25309826-25310106 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 13-294 |
| Cow position: | chrX:25310246-25310526 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 14-290 |
| Cow position: | chrX:25310079-25310354 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 16-293 |
| Cow position: | chrX:29045153-29044877 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 17-292 |
| Cow position: | chrX:29045068-29044794 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 102 |
| Conread position: | 38-288 |
| Cow position: | chrX:29045377-29045134 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 67-285 |
| Cow position: | chrX:29045837-29045620 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.