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Cow genome map

           
Conread name:
           
Ss1.1-rpliv0129_b1.5.5
        

               
Conread position:
               
2-211
               

               
Cow position:
               
chr11:9972957-9972751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr11:27658888-27659119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr11:27888781-27889042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr11:34455804-34456079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr11:45854353-45854062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr11:30449628-30449968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr11:35136082-35136443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr11:37280758-37280369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chr11:7481707-7482100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
2-423
               

               
Cow position:
               
chr11:1507288-1506857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
113, 94
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr11:7109483-7109061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
31, 193
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr11:87138291-87137858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr11:53113774-53113351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
2-444
               

               
Cow position:
               
chr11:22876479-22876029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chr11:27834806-27834370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
2-479
               

               
Cow position:
               
chr11:35571648-35571163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
2-482
               

               
Cow position:
               
chr11:66606807-66606299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 145
               

               
Conread position:
               
2-725
               

               
Cow position:
               
chr11:15250873-15250196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 120
               

               
Conread position:
               
2-746
               

               
Cow position:
               
chr11:74346340-74347067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
2-756
               

               
Cow position:
               
chr11:24107857-24108607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
2-759
               

               
Cow position:
               
chr11:35332887-35332144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
787
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr11:12318082-12317895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr11:44052349-44052677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr11:40774088-40773718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr11:26549426-26549815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
3-445
               

               
Cow position:
               
chr11:79020723-79021167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chr11:8265445-8265908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 165
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chr11:38833546-38833094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 144
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chr11:85391900-85391445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
3-746
               

               
Cow position:
               
chr11:38601008-38600276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
3-760
               

               
Cow position:
               
chr11:41168771-41168019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
4-304
               

               
Cow position:
               
chr11:55270614-55270311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
4-427
               

               
Cow position:
               
chr11:21470736-21471154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
4-461
               

               
Cow position:
               
chr11:29059752-29059331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
4-480
               

               
Cow position:
               
chr11:46766890-46767375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
5-480
               

               
Cow position:
               
chr11:34796916-34797386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
6-296
               

               
Cow position:
               
chr11:27667830-27667534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr11:1493800-1493604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
20, 161
               

               
Conread position:
               
8-295
               

               
Cow position:
               
chr11:53304059-53303772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
126, 52
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr11:23415266-23414886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 119
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr11:85209475-85209077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
8-479
               

               
Cow position:
               
chr11:20805880-20805420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 17
               

               
Conread position:
               
8-479
               

               
Cow position:
               
chr11:66568009-66568464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
12-183
               

               
Cow position:
               
chr11:27056624-27056447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
12-183
               

               
Cow position:
               
chr11:31864015-31864185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chr11:83325765-83325581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 6
               

               
Conread position:
               
12-221
               

               
Cow position:
               
chr11:78671918-78671706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr11:3279769-3280011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
12-298
               

               
Cow position:
               
chr11:40327948-40327656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 139
               

               
Conread position:
               
12-323
               

               
Cow position:
               
chr11:65022055-65022369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
12-331
               

               
Cow position:
               
chr11:39150865-39151187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 95
               

               
Conread position:
               
12-368
               

               
Cow position:
               
chr11:49038443-49038089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 6
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr11:44476011-44475649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 112
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr11:21897744-21897371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
12-422
               

               
Cow position:
               
chr11:7317856-7318263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
177, 159
               

               
Conread position:
               
12-447
               

               
Cow position:
               
chr11:12951212-12950787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
12-475
               

               
Cow position:
               
chr11:37070398-37069942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
12-478
               

               
Cow position:
               
chr11:37294138-37293674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
12-479
               

               
Cow position:
               
chr11:67864336-67863862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
12-760
               

               
Cow position:
               
chr11:3682913-3682160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
13-274
               

               
Cow position:
               
chr11:74563166-74563441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 207
               

               
Conread position:
               
13-349
               

               
Cow position:
               
chr11:17543245-17542911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
13-361
               

               
Cow position:
               
chr11:64384858-64385211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
13-367
               

               
Cow position:
               
chr11:4054361-4054002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 153
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chr11:10092612-10092985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chr11:31928109-31928484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 188
               

               
Conread position:
               
13-387
               

               
Cow position:
               
chr11:42310500-42310130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
103, 185
               

               
Conread position:
               
13-414
               

               
Cow position:
               
chr11:72589904-72590303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 185
               

               
Conread position:
               
13-435
               

               
Cow position:
               
chr11:10957763-10958187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
13-446
               

               
Cow position:
               
chr11:26122983-26122544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 296
               

               
Conread position:
               
13-474
               

               
Cow position:
               
chr11:73030217-73029757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
13-480
               

               
Cow position:
               
chr11:23873382-23873840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
13-500
               

               
Cow position:
               
chr11:12095728-12096234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chr11:7122028-7121288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 43
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chr11:44581294-44580555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 139
               

               
Conread position:
               
13-763
               

               
Cow position:
               
chr11:49172564-49171821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
14-212
               

               
Cow position:
               
chr11:51437913-51437712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
14-364
               

               
Cow position:
               
chr11:42364639-42364992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
14-760
               

               
Cow position:
               
chr11:67297071-67296333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 308
               

               
Conread position:
               
15-327
               

               
Cow position:
               
chr11:11377260-11377562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
18-653
               

               
Cow position:
               
chr11:9761841-9761207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
15, 254
               

               
Conread position:
               
20-951
               

               
Cow position:
               
chr11:26785200-26786132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
971
               

               
Alignm identity:
               
617
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
22-334
               

               
Cow position:
               
chr11:14686902-14686578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
24-323
               

               
Cow position:
               
chr11:30189755-30190057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 146
               

               
Conread position:
               
24-379
               

               
Cow position:
               
chr11:50835671-50835303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
25-362
               

               
Cow position:
               
chr11:44353043-44353380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
10, 210
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr11:42855757-42855415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
25-479
               

               
Cow position:
               
chr11:52563620-52564064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
26-182
               

               
Cow position:
               
chr11:11132067-11132224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
26-187
               

               
Cow position:
               
chr11:14261281-14261118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
26-187
               

               
Cow position:
               
chr11:27937083-27937244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-191
               

               
Cow position:
               
chr11:87137230-87137398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
26-206
               

               
Cow position:
               
chr11:43512672-43512501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr11:53309079-53308813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
26-296
               

               
Cow position:
               
chr11:7118361-7118640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-298
               

               
Cow position:
               
chr11:29666637-29666359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 125
               

               
Conread position:
               
26-299
               

               
Cow position:
               
chr11:9301033-9300751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
5, 112
               

               
Conread position:
               
26-342
               

               
Cow position:
               
chr11:84739841-84740155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
26-372
               

               
Cow position:
               
chr11:44515999-44515646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-379
               

               
Cow position:
               
chr11:4033444-4033089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
100, 138
               

               
Conread position:
               
26-379
               

               
Cow position:
               
chr11:78792117-78791755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr11:1488159-1487799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr11:8017670-8018034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
90, 222
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr11:42371768-42372137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 146
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chr11:32284958-32284615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
166, 57
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chr11:62251723-62252086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chr11:73135254-73135615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chr11:86672691-86673062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 139
               

               
Conread position:
               
26-399
               

               
Cow position:
               
chr11:8445172-8444792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
98, 288
               

               
Conread position:
               
26-399
               

               
Cow position:
               
chr11:59627382-59627001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
26-400
               

               
Cow position:
               
chr11:31749685-31749325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
166, 108
               

               
Conread position:
               
26-402
               

               
Cow position:
               
chr11:49238008-49237623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 285
               

               
Conread position:
               
26-419
               

               
Cow position:
               
chr11:2834230-2834626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 207
               

               
Conread position:
               
26-423
               

               
Cow position:
               
chr11:4885007-4884620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
26-423
               

               
Cow position:
               
chr11:9203916-9203527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
26-424
               

               
Cow position:
               
chr11:72868734-72869150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 190
               

               
Conread position:
               
26-424
               

               
Cow position:
               
chr11:74194274-74193879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
26-425
               

               
Cow position:
               
chr11:12504897-12504500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 225
               

               
Conread position:
               
26-427
               

               
Cow position:
               
chr11:7720434-7720037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
95, 139
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr11:9080596-9080178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr11:9155230-9154821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
87, 132
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr11:15126765-15127181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 310
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr11:60823766-60824173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
168, 70
               

               
Conread position:
               
26-436
               

               
Cow position:
               
chr11:3494932-3495346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 283
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:2349900-2350328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:4268194-4267776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 86
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:32078832-32078404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:39805666-39806091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 140
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:72312404-72312832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:75392200-75392628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr11:81339436-81339011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 167
               

               
Conread position:
               
26-445
               

               
Cow position:
               
chr11:26069106-26068684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 97
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr11:9732724-9732296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr11:17548126-17548538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr11:28392839-28393272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr11:35253340-35252921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr11:52845492-52845917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 283
               

               
Conread position:
               
26-448
               

               
Cow position:
               
chr11:48980980-48981393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
26-448
               

               
Cow position:
               
chr11:67446292-67445862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 280
               

               
Conread position:
               
26-450
               

               
Cow position:
               
chr11:75403531-75403116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
142, 98
               

               
Conread position:
               
26-479
               

               
Cow position:
               
chr11:12176375-12176837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 94
               

               
Conread position:
               
26-479
               

               
Cow position:
               
chr11:30181673-30181225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 195
               

               
Conread position:
               
26-680
               

               
Cow position:
               
chr11:41744508-41745151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 441
               

               
Conread position:
               
26-740
               

               
Cow position:
               
chr11:52421420-52422123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 125
               

               
Conread position:
               
26-743
               

               
Cow position:
               
chr11:30254182-30254888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
26-746
               

               
Cow position:
               
chr11:25182997-25183723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
26-757
               

               
Cow position:
               
chr11:7228204-7228926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
26-757
               

               
Cow position:
               
chr11:11590916-11591656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 367
               

               
Conread position:
               
26-758
               

               
Cow position:
               
chr11:38575535-38574810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 432
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:15987204-15987924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 297
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:17105731-17105014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:19062119-19061399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 79
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:19100534-19099810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 278
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:20732271-20731547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 127
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:27725945-27725226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 198
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:28227822-28227104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 98
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:32478856-32478137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:44155128-44154403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 83
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:44254026-44254749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:47737590-47736870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 111
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:56918041-56917332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 197
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:63391528-63390804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 369
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:67452602-67453330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 434
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:71331453-71332177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr11:84966065-84966789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 297
               

               
Conread position:
               
26-763
               

               
Cow position:
               
chr11:10850071-10850799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
26-776
               

               
Cow position:
               
chr11:30201737-30201003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 124
               

               
Conread position:
               
26-950
               

               
Cow position:
               
chr11:57626226-57625298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
959
               

               
Alignm identity:
               
628
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 252
               

               
Conread position:
               
26-962
               

               
Cow position:
               
chr11:32454009-32454957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
975
               

               
Alignm identity:
               
629
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 395
               

               
Conread position:
               
27-298
               

               
Cow position:
               
chr11:12356444-12356166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
27-381
               

               
Cow position:
               
chr11:24292408-24292766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
27-435
               

               
Cow position:
               
chr11:45106801-45107215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
27-444
               

               
Cow position:
               
chr11:40403802-40403385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
99, 124
               

               
Conread position:
               
27-444
               

               
Cow position:
               
chr11:73467477-73467040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
27-447
               

               
Cow position:
               
chr11:418772-418351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 244
               

               
Conread position:
               
27-447
               

               
Cow position:
               
chr11:22934640-22934210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 126
               

               
Conread position:
               
27-760
               

               
Cow position:
               
chr11:24395267-24396009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 114
               

               
Conread position:
               
27-760
               

               
Cow position:
               
chr11:33602681-33601953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 431
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr11:81065121-81065514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
28-435
               

               
Cow position:
               
chr11:66731109-66731512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 95
               

               
Conread position:
               
29-447
               

               
Cow position:
               
chr11:3227688-3228115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
29-760
               

               
Cow position:
               
chr11:53430071-53429347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 429
               

               
Conread position:
               
30-760
               

               
Cow position:
               
chr11:23881962-23882711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 362
               

               
Conread position:
               
31-424
               

               
Cow position:
               
chr11:5071146-5070741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
32-195
               

               
Cow position:
               
chr11:18127406-18127242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 113
               

               
Conread position:
               
32-273
               

               
Cow position:
               
chr11:9223366-9223116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chr11:13064029-13063760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chr11:82347447-82347153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
85, 139
               

               
Conread position:
               
32-389
               

               
Cow position:
               
chr11:4324450-4324814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 289
               

               
Conread position:
               
32-390
               

               
Cow position:
               
chr11:10884245-10884619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
32-444
               

               
Cow position:
               
chr11:21010437-21010033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr11:25791392-25790965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
158, 45
               

               
Conread position:
               
32-458
               

               
Cow position:
               
chr11:33864332-33863901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 42
               

               
Conread position:
               
33-220
               

               
Cow position:
               
chr11:42209458-42209644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
33-293
               

               
Cow position:
               
chr11:18889409-18889673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
33-447
               

               
Cow position:
               
chr11:76372102-76371683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
94, 69
               

               
Conread position:
               
34-204
               

               
Cow position:
               
chr11:35226291-35226117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
34-298
               

               
Cow position:
               
chr11:59370222-59370494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
34-381
               

               
Cow position:
               
chr11:4025540-4025180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 98
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr11:2705865-2705552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
263, 103
               

               
Conread position:
               
35-390
               

               
Cow position:
               
chr11:72017740-72018104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
84, 115
               

               
Conread position:
               
35-425
               

               
Cow position:
               
chr11:6078788-6079186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
157, 47
               

               
Conread position:
               
37-270
               

               
Cow position:
               
chr11:60339531-60339768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
163, 87
               

               
Conread position:
               
38-740
               

               
Cow position:
               
chr11:15994125-15994828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 265
               

               
Conread position:
               
38-760
               

               
Cow position:
               
chr11:47973892-47973176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 420
               

               
Conread position:
               
43-381
               

               
Cow position:
               
chr11:5982099-5982446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 214
               

               
Conread position:
               
43-438
               

               
Cow position:
               
chr11:40232305-40231947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-435
               

               
Cow position:
               
chr11:30121676-30121279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
50-470
               

               
Cow position:
               
chr11:52618257-52617835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
60-426
               

               
Cow position:
               
chr11:69220055-69219687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 83
               

               
Conread position:
               
63-435
               

               
Cow position:
               
chr11:76565436-76565818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 106
               

               
Conread position:
               
69-389
               

               
Cow position:
               
chr11:46682459-46682784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
71-444
               

               
Cow position:
               
chr11:28124507-28124890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
71-444
               

               
Cow position:
               
chr11:81318935-81318553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
72-347
               

               
Cow position:
               
chr11:78781134-78780857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 52
               

               
Conread position:
               
72-404
               

               
Cow position:
               
chr11:36764669-36765000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
75-382
               

               
Cow position:
               
chr11:4061871-4061569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
75-426
               

               
Cow position:
               
chr11:62419722-62420078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
49, 233
               

               
Conread position:
               
75-725
               

               
Cow position:
               
chr11:9387818-9387159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
75-760
               

               
Cow position:
               
chr11:39585725-39585046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 392
               

               
Conread position:
               
75-965
               

               
Cow position:
               
chr11:35862631-35861748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
916
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 245
               

               
Conread position:
               
76-444
               

               
Cow position:
               
chr11:41422908-41422530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
78-425
               

               
Cow position:
               
chr11:67243973-67243614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
82-484
               

               
Cow position:
               
chr11:21848101-21847697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
86-399
               

               
Cow position:
               
chr11:46778480-46778173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 104
               

               
Conread position:
               
87-398
               

               
Cow position:
               
chr11:9240080-9239777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
89-477
               

               
Cow position:
               
chr11:67341197-67341587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
98, 187
               

               
Conread position:
               
96-379
               

               
Cow position:
               
chr11:81809186-81809476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
96-740
               

               
Cow position:
               
chr11:25099152-25098515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 371
               

               
Conread position:
               
98-469
               

               
Cow position:
               
chr11:9197998-9197631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
99-479
               

               
Cow position:
               
chr11:38795859-38796241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
107-273
               

               
Cow position:
               
chr11:63163443-63163276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
109-721
               

               
Cow position:
               
chr11:55484289-55484876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
111-381
               

               
Cow position:
               
chr11:25395207-25395484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
111-478
               

               
Cow position:
               
chr11:48788659-48788296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
113-435
               

               
Cow position:
               
chr11:44232487-44232810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
113-447
               

               
Cow position:
               
chr11:35143288-35142944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
63, 214
               

               
Conread position:
               
113-677
               

               
Cow position:
               
chr11:49013024-49012472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 352
               

               
Conread position:
               
113-760
               

               
Cow position:
               
chr11:10699707-10699071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
115-465
               

               
Cow position:
               
chr11:9577238-9576893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr11:15536245-15536472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
106, 60
               

               
Conread position:
               
117-775
               

               
Cow position:
               
chr11:10129680-10129055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
198, 15
               

               
Conread position:
               
119-479
               

               
Cow position:
               
chr11:16591711-16592044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
120-381
               

               
Cow position:
               
chr11:15720678-15720414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
123-443
               

               
Cow position:
               
chr11:39489512-39489824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
124-423
               

               
Cow position:
               
chr11:21138084-21138392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 191
               

               
Conread position:
               
136-444
               

               
Cow position:
               
chr11:26052458-26052143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 106
               

               
Conread position:
               
136-479
               

               
Cow position:
               
chr11:35255394-35255063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chr11:14735276-14734996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 120
               

               
Conread position:
               
146-444
               

               
Cow position:
               
chr11:58138781-58139085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
46, 204
               

               
Conread position:
               
147-366
               

               
Cow position:
               
chr11:77435650-77435858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
153-434
               

               
Cow position:
               
chr11:77681744-77682021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
153-435
               

               
Cow position:
               
chr11:9431295-9431584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
163-342
               

               
Cow position:
               
chr11:65159787-65159971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 112
               

               
Conread position:
               
168-444
               

               
Cow position:
               
chr11:58947735-58948014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
24, 145
               

               
Conread position:
               
171-418
               

               
Cow position:
               
chr11:34022074-34022327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 168
               

               
Conread position:
               
171-424
               

               
Cow position:
               
chr11:81846890-81847148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
173-775
               

               
Cow position:
               
chr11:73799603-73799009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 283
               

               
Conread position:
               
178-444
               

               
Cow position:
               
chr11:7926984-7926709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
186-422
               

               
Cow position:
               
chr11:85731894-85731662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
202, 16
               

               
Conread position:
               
197-456
               

               
Cow position:
               
chr11:63902100-63901844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
216-760
               

               
Cow position:
               
chr11:27659396-27659924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
173, 9
               

               
Conread position:
               
221-467
               

               
Cow position:
               
chr11:21476776-21477020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
167, 16
               

               
Conread position:
               
222-387
               

               
Cow position:
               
chr11:62575787-62575623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
222-418
               

               
Cow position:
               
chr11:27937560-27937757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
222-443
               

               
Cow position:
               
chr11:23624062-23623839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
99, 179
               

               
Conread position:
               
222-447
               

               
Cow position:
               
chr11:43511819-43511593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
222-709
               

               
Cow position:
               
chr11:41234827-41235297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
167, 236
               

               
Conread position:
               
222-760
               

               
Cow position:
               
chr11:11990141-11990664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
167, 225
               

               
Conread position:
               
222-760
               

               
Cow position:
               
chr11:30105040-30104516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 236
               

               
Conread position:
               
225-479
               

               
Cow position:
               
chr11:1977657-1977414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr11:42209705-42209900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
228-445
               

               
Cow position:
               
chr11:3370621-3370402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
228-480
               

               
Cow position:
               
chr11:15652311-15652548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
233-458
               

               
Cow position:
               
chr11:48740745-48740520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
156, 74
               

               
Conread position:
               
237-760
               

               
Cow position:
               
chr11:61398442-61397940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
152, 72
               

               
Conread position:
               
242-760
               

               
Cow position:
               
chr11:58135891-58136392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
147, 156
               

               
Conread position:
               
245-424
               

               
Cow position:
               
chr11:45871514-45871337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
143, 87
               

               
Conread position:
               
248-444
               

               
Cow position:
               
chr11:39807104-39807301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
248-446
               

               
Cow position:
               
chr11:26654796-26654998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
256-478
               

               
Cow position:
               
chr11:23124741-23124521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
258-455
               

               
Cow position:
               
chr11:13021924-13022116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
264-444
               

               
Cow position:
               
chr11:54174262-54174442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
124, 9
               

               
Conread position:
               
287-738
               

               
Cow position:
               
chr11:4192861-4193291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 48
               

               
Conread position:
               
495-745
               

               
Cow position:
               
chr11:37293686-37293430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
40, 208
               

               
Conread position:
               
495-759
               

               
Cow position:
               
chr11:66568451-66568726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
495-760
               

               
Cow position:
               
chr11:45549548-45549820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 99
               

               
Conread position:
               
495-760
               

               
Cow position:
               
chr11:50834358-50834084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 179
               

               
Conread position:
               
495-1170
               

               
Cow position:
               
chr11:8819622-8820321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 226
               

               
Conread position:
               
496-967
               

               
Cow position:
               
chr11:3076054-3076541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
497-1170
               

               
Cow position:
               
chr11:20805431-20804740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
500-722
               

               
Cow position:
               
chr11:34797377-34797596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
523-720
               

               
Cow position:
               
chr11:31224886-31225083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
525-732
               

               
Cow position:
               
chr11:49484667-49484876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
525-932
               

               
Cow position:
               
chr11:34456434-34456855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
526-736
               

               
Cow position:
               
chr11:8837252-8837044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
526-740
               

               
Cow position:
               
chr11:15652568-15652787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
526-1061
               

               
Cow position:
               
chr11:39489875-39490402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
526-1159
               

               
Cow position:
               
chr11:76276827-76276172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 383
               

               
Conread position:
               
526-1224
               

               
Cow position:
               
chr11:77435990-77436705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
527-756
               

               
Cow position:
               
chr11:70811587-70811816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
533-740
               

               
Cow position:
               
chr11:58819826-58820038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
538-758
               

               
Cow position:
               
chr11:81317846-81317615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
551-760
               

               
Cow position:
               
chr11:50511212-50510997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
551-811
               

               
Cow position:
               
chr11:72085722-72085975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
591-810
               

               
Cow position:
               
chr11:42556022-42556252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
91, 46
               

               
Conread position:
               
595-1100
               

               
Cow position:
               
chr11:54650357-54649829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
609-1224
               

               
Cow position:
               
chr11:19705495-19706122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 120
               

               
Conread position:
               
629-952
               

               
Cow position:
               
chr11:417914-417580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 40
               

               
Conread position:
               
771-1224
               

               
Cow position:
               
chr11:34608644-34609123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 114
               

               
Conread position:
               
771-1224
               

               
Cow position:
               
chr11:75255628-75256089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
772-1224
               

               
Cow position:
               
chr11:49485577-49486047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
774-1170
               

               
Cow position:
               
chr11:12117983-12118362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
774-1224
               

               
Cow position:
               
chr11:15942600-15942139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
884-1218
               

               
Cow position:
               
chr11:62873873-62873539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
884-1224
               

               
Cow position:
               
chr11:9561393-9561046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
884-1224
               

               
Cow position:
               
chr11:12178805-12179156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
80, 203
               

               
Conread position:
               
884-1224
               

               
Cow position:
               
chr11:35956648-35956985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
884-1224
               

               
Cow position:
               
chr11:40502642-40502295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
66, 104
               

               
Conread position:
               
884-1224
               

               
Cow position:
               
chr11:61485989-61485632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 195
               

               
Conread position:
               
885-1224
               

               
Cow position:
               
chr11:17452890-17453243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 199
               

               
Conread position:
               
885-1224
               

               
Cow position:
               
chr11:46032929-46032564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 279
               

               
Conread position:
               
888-1170
               

               
Cow position:
               
chr11:36453824-36453543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
889-1224
               

               
Cow position:
               
chr11:15653319-15653667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
917-1222
               

               
Cow position:
               
chr11:60170157-60170462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
918-1224
               

               
Cow position:
               
chr11:40362696-40362378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
947-1224
               

               
Cow position:
               
chr11:56459650-56459374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 95
               

               
Conread position:
               
950-1167
               

               
Cow position:
               
chr11:84751350-84751562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
165, 118
               

               
Conread position:
               
951-1170
               

               
Cow position:
               
chr11:48796417-48796199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
957-1224
               

               
Cow position:
               
chr11:2619932-2620198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 7
               

               
Conread position:
               
957-1224
               

               
Cow position:
               
chr11:34457711-34457978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
215, 116
               

               
Conread position:
               
957-1224
               

               
Cow position:
               
chr11:35262885-35262618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
957-1224
               

               
Cow position:
               
chr11:53855447-53855714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
966-1224
               

               
Cow position:
               
chr11:76970305-76970041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
107, 99
               
Show alignments to all cow chromosomes.