Cow genome map

Conread name: Ss1.1-rpliv0129_b1.5.5

Conread position: 1-682
Cow position:
Alignm length: 713
Alignm identity: 450
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 65, 76

Conread position: 2-195
Cow position:
Alignm length: 198
Alignm identity: 140
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 105

Conread position: 2-366
Cow position:
Alignm length: 374
Alignm identity: 242
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 48

Conread position: 2-388
Cow position:
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 200

Conread position: 2-405
Cow position:
Alignm length: 417
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 272

Conread position: 2-435
Cow position:
Alignm length: 445
Alignm identity: 294
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 6, 74

Conread position: 2-446
Cow position:
Alignm length: 454
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 52

Conread position: 2-476
Cow position:
Alignm length: 487
Alignm identity: 317
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 112, 14

Conread position: 2-479
Cow position:
Alignm length: 490
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 45

Conread position: 3-374
Cow position:
Alignm length: 380
Alignm identity: 238
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 94

Conread position: 3-428
Cow position:
Alignm length: 435
Alignm identity: 292
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 183, 56

Conread position: 3-447
Cow position:
Alignm length: 458
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 70

Conread position: 3-479
Cow position:
Alignm length: 494
Alignm identity: 324
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 118, 54

Conread position: 3-760
Cow position:
Alignm length: 775
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 94

Conread position: 4-381
Cow position:
Alignm length: 388
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 144

Conread position: 12-179
Cow position:
Alignm length: 170
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 6

Conread position: 12-221
Cow position:
Alignm length: 214
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 6

Conread position: 12-348
Cow position:
Alignm length: 345
Alignm identity: 228
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 12

Conread position: 12-410
Cow position:
Alignm length: 422
Alignm identity: 277
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 110, 6

Conread position: 12-436
Cow position:
Alignm length: 430
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 6

Conread position: 12-444
Cow position:
Alignm length: 435
Alignm identity: 291
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 177, 94

Conread position: 12-447
Cow position:
Alignm length: 446
Alignm identity: 286
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 15, 6

Conread position: 12-477
Cow position:
Alignm length: 492
Alignm identity: 330
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 21, 86

Conread position: 12-686
Cow position:
Alignm length: 699
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 6

Conread position: 13-399
Cow position:
Alignm length: 399
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 13-444
Cow position:
Alignm length: 443
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 59

Conread position: 13-447
Cow position:
Alignm length: 445
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 139

Conread position: 13-740
Cow position:
Alignm length: 740
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 104

Conread position: 13-757
Cow position:
Alignm length: 769
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 135

Conread position: 14-444
Cow position:
Alignm length: 455
Alignm identity: 298
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 14-444
Cow position:
Alignm length: 452
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 387

Conread position: 17-342
Cow position:
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 130

Conread position: 17-746
Cow position:
Alignm length: 744
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 191

Conread position: 24-479
Cow position:
Alignm length: 477
Alignm identity: 308
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 9, 72

Conread position: 25-740
Cow position:
Alignm length: 733
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 50

Conread position: 26-221
Cow position:
Alignm length: 199
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 98, 0

Conread position: 26-229
Cow position:
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 119

Conread position: 26-268
Cow position:
Alignm length: 252
Alignm identity: 183
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 98, 0

Conread position: 26-276
Cow position:
Alignm length: 259
Alignm identity: 186
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 100, 125

Conread position: 26-292
Cow position:
Alignm length: 276
Alignm identity: 197
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 96, 230

Conread position: 26-382
Cow position:
Alignm length: 365
Alignm identity: 245
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 95, 0

Conread position: 26-399
Cow position:
Alignm length: 384
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 12

Conread position: 26-415
Cow position:
Alignm length: 397
Alignm identity: 264
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 58, 170

Conread position: 26-425
Cow position:
Alignm length: 404
Alignm identity: 269
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 89, 28

Conread position: 26-444
Cow position:
Alignm length: 429
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 26-447
Cow position:
Alignm length: 428
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-447
Cow position:
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 26-447
Cow position:
Alignm length: 426
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 13

Conread position: 26-447
Cow position:
Alignm length: 423
Alignm identity: 282
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 363, 69

Conread position: 26-456
Cow position:
Alignm length: 451
Alignm identity: 296
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 98, 196

Conread position: 26-458
Cow position:
Alignm length: 443
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 432

Conread position: 26-479
Cow position:
Alignm length: 463
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 385

Conread position: 26-680
Cow position:
Alignm length: 667
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 441

Conread position: 26-725
Cow position:
Alignm length: 720
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 71

Conread position: 26-746
Cow position:
Alignm length: 740
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-759
Cow position:
Alignm length: 752
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 432

Conread position: 26-760
Cow position:
Alignm length: 750
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 368

Conread position: 26-760
Cow position:
Alignm length: 753
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 73

Conread position: 26-760
Cow position:
Alignm length: 753
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 432

Conread position: 26-760
Cow position:
Alignm length: 750
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 12

Conread position: 26-760
Cow position:
Alignm length: 752
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 420

Conread position: 26-760
Cow position:
Alignm length: 761
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 86

Conread position: 26-760
Cow position:
Alignm length: 753
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 154

Conread position: 26-760
Cow position:
Alignm length: 754
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 141

Conread position: 26-760
Cow position:
Alignm length: 753
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 73

Conread position: 26-760
Cow position:
Alignm length: 752
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 406

Conread position: 26-760
Cow position:
Alignm length: 751
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-760
Cow position:
Alignm length: 752
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 98

Conread position: 27-185
Cow position:
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 27-329
Cow position:
Alignm length: 312
Alignm identity: 221
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 103, 61

Conread position: 27-375
Cow position:
Alignm length: 363
Alignm identity: 236
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 89, 149

Conread position: 27-725
Cow position:
Alignm length: 714
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 125

Conread position: 32-308
Cow position:
Alignm length: 286
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 94, 63

Conread position: 32-381
Cow position:
Alignm length: 358
Alignm identity: 233
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 198, 63

Conread position: 32-480
Cow position:
Alignm length: 454
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 22

Conread position: 33-436
Cow position:
Alignm length: 414
Alignm identity: 273
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 93, 302

Conread position: 39-340
Cow position:
Alignm length: 308
Alignm identity: 222
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 153, 10

Conread position: 39-760
Cow position:
Alignm length: 740
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 104

Conread position: 40-296
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 149, 111

Conread position: 43-479
Cow position:
Alignm length: 458
Alignm identity: 290
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 145, 48

Conread position: 46-353
Cow position:
Alignm length: 314
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 26

Conread position: 47-760
Cow position:
Alignm length: 733
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 413

Conread position: 63-760
Cow position:
Alignm length: 712
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 378

Conread position: 66-294
Cow position:
Alignm length: 237
Alignm identity: 173
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 123, 56

Conread position: 67-193
Cow position:
Alignm length: 129
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 71-359
Cow position:
Alignm length: 298
Alignm identity: 203
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 50, 182

Conread position: 71-444
Cow position:
Alignm length: 384
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 71-475
Cow position:
Alignm length: 420
Alignm identity: 285
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 45, 68

Conread position: 74-772
Cow position:
Alignm length: 717
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 384

Conread position: 80-378
Cow position:
Alignm length: 307
Alignm identity: 154
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 98-347
Cow position:
Alignm length: 268
Alignm identity: 181
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 53

Conread position: 98-350
Cow position:
Alignm length: 260
Alignm identity: 177
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 92, 21

Conread position: 98-447
Cow position:
Alignm length: 359
Alignm identity: 244
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 19, 53

Conread position: 109-276
Cow position:
Alignm length: 175
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 80, 41

Conread position: 109-435
Cow position:
Alignm length: 329
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 46

Conread position: 111-479
Cow position:
Alignm length: 379
Alignm identity: 254
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 81, 31

Conread position: 115-360
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 85, 19

Conread position: 115-444
Cow position:
Alignm length: 343
Alignm identity: 202
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 82, 24

Conread position: 115-447
Cow position:
Alignm length: 342
Alignm identity: 223
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 28, 152

Conread position: 147-479
Cow position:
Alignm length: 343
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 45, 317

Conread position: 154-435
Cow position:
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 10

Conread position: 154-478
Cow position:
Alignm length: 333
Alignm identity: 219
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 57, 42

Conread position: 156-479
Cow position:
Alignm length: 327
Alignm identity: 221
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 232, 25

Conread position: 160-765
Cow position:
Alignm length: 621
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 294

Conread position: 178-480
Cow position:
Alignm length: 309
Alignm identity: 213
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 49

Conread position: 197-480
Cow position:
Alignm length: 286
Alignm identity: 192
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 159, 25

Conread position: 205-462
Cow position:
Alignm length: 263
Alignm identity: 169
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 218-444
Cow position:
Alignm length: 228
Alignm identity: 151
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 184, 129

Conread position: 220-724
Cow position:
Alignm length: 512
Alignm identity: 333
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 168, 17

Conread position: 225-444
Cow position:
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 187

Conread position: 225-760
Cow position:
Alignm length: 546
Alignm identity: 351
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 164, 38

Conread position: 227-444
Cow position:
Alignm length: 221
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 73

Conread position: 228-447
Cow position:
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 161, 0

Conread position: 230-444
Cow position:
Alignm length: 216
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 159, 0

Conread position: 231-397
Cow position:
Alignm length: 168
Alignm identity: 122
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 157, 69

Conread position: 248-760
Cow position:
Alignm length: 519
Alignm identity: 340
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 114, 105

Conread position: 250-760
Cow position:
Alignm length: 519
Alignm identity: 340
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 139, 208

Conread position: 252-472
Cow position:
Alignm length: 223
Alignm identity: 158
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 33

Conread position: 309-736
Cow position:
Alignm length: 435
Alignm identity: 293
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 79, 140

Conread position: 327-783
Cow position:
Alignm length: 467
Alignm identity: 304
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 131

Conread position: 495-1167
Cow position:
Alignm length: 703
Alignm identity: 425
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 53, 96

Conread position: 531-738
Cow position:
Alignm length: 212
Alignm identity: 143
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 155

Conread position: 537-760
Cow position:
Alignm length: 232
Alignm identity: 159
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 134

Conread position: 537-760
Cow position:
Alignm length: 229
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 134

Conread position: 537-760
Cow position:
Alignm length: 232
Alignm identity: 157
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 16, 134

Conread position: 551-759
Cow position:
Alignm length: 216
Alignm identity: 147
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 119

Conread position: 551-760
Cow position:
Alignm length: 218
Alignm identity: 152
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 17, 119

Conread position: 551-783
Cow position:
Alignm length: 241
Alignm identity: 161
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 216

Conread position: 757-1224
Cow position:
Alignm length: 490
Alignm identity: 323
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 115, 70

Conread position: 852-1159
Cow position:
Alignm length: 316
Alignm identity: 202
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 7

Conread position: 884-1169
Cow position:
Alignm length: 292
Alignm identity: 196
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 122

Conread position: 885-1218
Cow position:
Alignm length: 350
Alignm identity: 224
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 213

Conread position: 888-1224
Cow position:
Alignm length: 342
Alignm identity: 218
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 100, 110

Conread position: 957-1224
Cow position:
Alignm length: 276
Alignm identity: 188
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 71, 25

Conread position: 961-1221
Cow position:
Alignm length: 271
Alignm identity: 178
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 143

Show alignments to all cow chromosomes.