Cow genome map

Conread name: Ss1.1-rpliv0129_b1.5.5

Conread position: 1-479
Cow position:
Alignm length: 495
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 2-294
Cow position:
Alignm length: 298
Alignm identity: 204
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 32, 155

Conread position: 2-331
Cow position:
Alignm length: 346
Alignm identity: 231
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 29, 66

Conread position: 2-351
Cow position:
Alignm length: 356
Alignm identity: 225
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 264

Conread position: 2-381
Cow position:
Alignm length: 386
Alignm identity: 263
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 125, 52

Conread position: 2-389
Cow position:
Alignm length: 394
Alignm identity: 259
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 27, 61

Conread position: 2-444
Cow position:
Alignm length: 454
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 71

Conread position: 2-479
Cow position:
Alignm length: 484
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 86

Conread position: 3-757
Cow position:
Alignm length: 790
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 144

Conread position: 3-775
Cow position:
Alignm length: 790
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 149

Conread position: 8-401
Cow position:
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 49

Conread position: 8-1224
Cow position:
Alignm length: 1284
Alignm identity: 786
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 17

Conread position: 11-334
Cow position:
Alignm length: 342
Alignm identity: 228
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 41

Conread position: 12-193
Cow position:
Alignm length: 184
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 12-381
Cow position:
Alignm length: 384
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 6

Conread position: 12-424
Cow position:
Alignm length: 432
Alignm identity: 276
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 55, 60

Conread position: 12-760
Cow position:
Alignm length: 777
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 148

Conread position: 12-760
Cow position:
Alignm length: 767
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 126

Conread position: 12-966
Cow position:
Alignm length: 989
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 116

Conread position: 13-216
Cow position:
Alignm length: 209
Alignm identity: 156
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 21, 172

Conread position: 13-424
Cow position:
Alignm length: 428
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 41

Conread position: 13-681
Cow position:
Alignm length: 682
Alignm identity: 432
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 83

Conread position: 14-475
Cow position:
Alignm length: 472
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 106

Conread position: 26-187
Cow position:
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 26-187
Cow position:
Alignm length: 162
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 26-221
Cow position:
Alignm length: 199
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 90, 142

Conread position: 26-291
Cow position:
Alignm length: 274
Alignm identity: 189
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 93, 28

Conread position: 26-296
Cow position:
Alignm length: 280
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 98, 0

Conread position: 26-363
Cow position:
Alignm length: 339
Alignm identity: 222
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 188, 97

Conread position: 26-366
Cow position:
Alignm length: 345
Alignm identity: 225
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 48, 99

Conread position: 26-378
Cow position:
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 26-381
Cow position:
Alignm length: 363
Alignm identity: 246
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 166, 65

Conread position: 26-381
Cow position:
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 120

Conread position: 26-382
Cow position:
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-384
Cow position:
Alignm length: 368
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-385
Cow position:
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 125

Conread position: 26-424
Cow position:
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 16

Conread position: 26-425
Cow position:
Alignm length: 407
Alignm identity: 264
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 91, 221

Conread position: 26-427
Cow position:
Alignm length: 415
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 94

Conread position: 26-427
Cow position:
Alignm length: 408
Alignm identity: 265
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 98, 126

Conread position: 26-435
Cow position:
Alignm length: 419
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 97

Conread position: 26-447
Cow position:
Alignm length: 432
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 283

Conread position: 26-448
Cow position:
Alignm length: 435
Alignm identity: 301
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 10, 46

Conread position: 26-479
Cow position:
Alignm length: 466
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 26-680
Cow position:
Alignm length: 667
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 243

Conread position: 26-725
Cow position:
Alignm length: 715
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 441

Conread position: 26-757
Cow position:
Alignm length: 765
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 437

Conread position: 26-760
Cow position:
Alignm length: 752
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 46

Conread position: 26-760
Cow position:
Alignm length: 761
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 439

Conread position: 26-760
Cow position:
Alignm length: 754
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 87

Conread position: 26-760
Cow position:
Alignm length: 756
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 189

Conread position: 26-760
Cow position:
Alignm length: 752
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 292

Conread position: 26-760
Cow position:
Alignm length: 746
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 30

Conread position: 26-760
Cow position:
Alignm length: 762
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 432

Conread position: 26-760
Cow position:
Alignm length: 753
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 370

Conread position: 26-760
Cow position:
Alignm length: 754
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 441

Conread position: 26-776
Cow position:
Alignm length: 768
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 125

Conread position: 27-268
Cow position:
Alignm length: 249
Alignm identity: 168
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 94, 39

Conread position: 28-388
Cow position:
Alignm length: 374
Alignm identity: 226
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 87, 131

Conread position: 28-444
Cow position:
Alignm length: 430
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 107

Conread position: 29-251
Cow position:
Alignm length: 233
Alignm identity: 166
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 87, 60

Conread position: 29-447
Cow position:
Alignm length: 429
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 67

Conread position: 29-463
Cow position:
Alignm length: 446
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 30-740
Cow position:
Alignm length: 727
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 110

Conread position: 32-295
Cow position:
Alignm length: 268
Alignm identity: 189
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 87, 53

Conread position: 32-333
Cow position:
Alignm length: 311
Alignm identity: 213
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 89, 146

Conread position: 34-366
Cow position:
Alignm length: 340
Alignm identity: 230
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 158, 90

Conread position: 38-381
Cow position:
Alignm length: 352
Alignm identity: 239
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 83, 129

Conread position: 42-375
Cow position:
Alignm length: 338
Alignm identity: 220
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 86, 57

Conread position: 62-381
Cow position:
Alignm length: 327
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 62-444
Cow position:
Alignm length: 394
Alignm identity: 269
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 56, 104

Conread position: 74-382
Cow position:
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 78

Conread position: 75-435
Cow position:
Alignm length: 366
Alignm identity: 249
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 49, 63

Conread position: 76-419
Cow position:
Alignm length: 354
Alignm identity: 237
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 207

Conread position: 81-254
Cow position:
Alignm length: 183
Alignm identity: 136
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 81-776
Cow position:
Alignm length: 707
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 370

Conread position: 88-304
Cow position:
Alignm length: 221
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 72

Conread position: 102-425
Cow position:
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 113-458
Cow position:
Alignm length: 356
Alignm identity: 238
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 11, 24

Conread position: 114-479
Cow position:
Alignm length: 385
Alignm identity: 256
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 16, 9

Conread position: 115-390
Cow position:
Alignm length: 278
Alignm identity: 197
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 117, 13

Conread position: 116-390
Cow position:
Alignm length: 279
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 71

Conread position: 117-435
Cow position:
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 167

Conread position: 121-389
Cow position:
Alignm length: 275
Alignm identity: 191
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 53, 11

Conread position: 125-429
Cow position:
Alignm length: 314
Alignm identity: 210
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 99, 67

Conread position: 130-444
Cow position:
Alignm length: 323
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 139-479
Cow position:
Alignm length: 347
Alignm identity: 231
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 82, 46

Conread position: 142-479
Cow position:
Alignm length: 354
Alignm identity: 233
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 74, 185

Conread position: 146-294
Cow position:
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 74

Conread position: 146-783
Cow position:
Alignm length: 655
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 319

Conread position: 154-479
Cow position:
Alignm length: 338
Alignm identity: 230
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 38, 172

Conread position: 168-1169
Cow position:
Alignm length: 1037
Alignm identity: 627
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 24, 183

Conread position: 177-760
Cow position:
Alignm length: 599
Alignm identity: 383
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 15, 130

Conread position: 198-479
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 93

Conread position: 198-760
Cow position:
Alignm length: 572
Alignm identity: 333
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 191, 159

Conread position: 201-444
Cow position:
Alignm length: 248
Alignm identity: 168
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 214-717
Cow position:
Alignm length: 518
Alignm identity: 319
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 65

Conread position: 222-423
Cow position:
Alignm length: 203
Alignm identity: 144
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 167, 0

Conread position: 228-415
Cow position:
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 160, 0

Conread position: 228-477
Cow position:
Alignm length: 253
Alignm identity: 172
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 50

Conread position: 233-447
Cow position:
Alignm length: 218
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 130, 66

Conread position: 242-435
Cow position:
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 147, 0

Conread position: 263-427
Cow position:
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 123, 15

Conread position: 302-760
Cow position:
Alignm length: 468
Alignm identity: 302
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 87, 74

Conread position: 526-686
Cow position:
Alignm length: 161
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 139, 0

Conread position: 551-775
Cow position:
Alignm length: 233
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 119

Conread position: 553-759
Cow position:
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 85

Conread position: 592-1224
Cow position:
Alignm length: 674
Alignm identity: 419
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 63

Conread position: 774-1224
Cow position:
Alignm length: 473
Alignm identity: 311
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 44, 32

Conread position: 883-1169
Cow position:
Alignm length: 289
Alignm identity: 195
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 30

Conread position: 884-1142
Cow position:
Alignm length: 261
Alignm identity: 185
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 21, 71

Conread position: 888-1218
Cow position:
Alignm length: 349
Alignm identity: 233
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 38

Conread position: 939-1204
Cow position:
Alignm length: 270
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 31

Conread position: 949-1224
Cow position:
Alignm length: 284
Alignm identity: 196
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 123, 61

Conread position: 969-1222
Cow position:
Alignm length: 261
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 146, 13

Show alignments to all cow chromosomes.