Cow genome map

Conread name: Ss1.1-rpliv0129_b1.5.5

Conread position: 1-425
Cow position:
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 320

Conread position: 2-216
Cow position:
Alignm length: 221
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 90

Conread position: 2-218
Cow position:
Alignm length: 221
Alignm identity: 162
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 28, 17

Conread position: 2-389
Cow position:
Alignm length: 391
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 146

Conread position: 2-446
Cow position:
Alignm length: 457
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 3-229
Cow position:
Alignm length: 232
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 3-444
Cow position:
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 329

Conread position: 3-444
Cow position:
Alignm length: 460
Alignm identity: 295
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 74

Conread position: 4-444
Cow position:
Alignm length: 449
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 149

Conread position: 8-952
Cow position:
Alignm length: 997
Alignm identity: 645
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 21

Conread position: 12-196
Cow position:
Alignm length: 187
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 101, 14

Conread position: 12-295
Cow position:
Alignm length: 292
Alignm identity: 201
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 15, 6

Conread position: 12-347
Cow position:
Alignm length: 347
Alignm identity: 233
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 18, 44

Conread position: 12-375
Cow position:
Alignm length: 369
Alignm identity: 239
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 21, 6

Conread position: 12-384
Cow position:
Alignm length: 382
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 14

Conread position: 12-398
Cow position:
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 111

Conread position: 12-425
Cow position:
Alignm length: 424
Alignm identity: 274
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 21, 43

Conread position: 12-425
Cow position:
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 177

Conread position: 12-426
Cow position:
Alignm length: 426
Alignm identity: 277
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 95, 162

Conread position: 12-435
Cow position:
Alignm length: 432
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 14

Conread position: 12-435
Cow position:
Alignm length: 433
Alignm identity: 285
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 180, 45

Conread position: 12-445
Cow position:
Alignm length: 445
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 6

Conread position: 12-447
Cow position:
Alignm length: 444
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 36

Conread position: 13-380
Cow position:
Alignm length: 377
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 13-426
Cow position:
Alignm length: 425
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 84

Conread position: 13-444
Cow position:
Alignm length: 443
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 134

Conread position: 13-455
Cow position:
Alignm length: 456
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 448

Conread position: 13-480
Cow position:
Alignm length: 477
Alignm identity: 314
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 112

Conread position: 13-760
Cow position:
Alignm length: 764
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 134

Conread position: 25-362
Cow position:
Alignm length: 345
Alignm identity: 237
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 11, 38

Conread position: 25-447
Cow position:
Alignm length: 431
Alignm identity: 281
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 166, 95

Conread position: 26-183
Cow position:
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 26-186
Cow position:
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 26-341
Cow position:
Alignm length: 325
Alignm identity: 227
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 98, 0

Conread position: 26-380
Cow position:
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 125

Conread position: 26-422
Cow position:
Alignm length: 406
Alignm identity: 270
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 123, 85

Conread position: 26-427
Cow position:
Alignm length: 417
Alignm identity: 283
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 98, 120

Conread position: 26-444
Cow position:
Alignm length: 429
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 30

Conread position: 26-444
Cow position:
Alignm length: 437
Alignm identity: 291
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 8, 130

Conread position: 26-444
Cow position:
Alignm length: 445
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 98

Conread position: 26-445
Cow position:
Alignm length: 439
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 101

Conread position: 26-447
Cow position:
Alignm length: 439
Alignm identity: 292
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 61, 71

Conread position: 26-447
Cow position:
Alignm length: 432
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 30

Conread position: 26-447
Cow position:
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-479
Cow position:
Alignm length: 463
Alignm identity: 298
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 30

Conread position: 26-479
Cow position:
Alignm length: 456
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 168

Conread position: 26-760
Cow position:
Alignm length: 753
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 120

Conread position: 26-760
Cow position:
Alignm length: 746
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 147

Conread position: 26-760
Cow position:
Alignm length: 757
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 432

Conread position: 27-382
Cow position:
Alignm length: 366
Alignm identity: 253
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 6, 70

Conread position: 27-442
Cow position:
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 27

Conread position: 28-436
Cow position:
Alignm length: 415
Alignm identity: 271
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 160, 79

Conread position: 29-479
Cow position:
Alignm length: 465
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 21

Conread position: 31-447
Cow position:
Alignm length: 427
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 32-234
Cow position:
Alignm length: 206
Alignm identity: 148
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 84, 119

Conread position: 33-184
Cow position:
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 6

Conread position: 33-437
Cow position:
Alignm length: 414
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 132

Conread position: 33-444
Cow position:
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 13

Conread position: 43-674
Cow position:
Alignm length: 640
Alignm identity: 410
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 81, 11

Conread position: 62-760
Cow position:
Alignm length: 721
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 91

Conread position: 63-421
Cow position:
Alignm length: 367
Alignm identity: 249
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 53, 27

Conread position: 66-268
Cow position:
Alignm length: 209
Alignm identity: 148
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 146, 51

Conread position: 68-382
Cow position:
Alignm length: 319
Alignm identity: 221
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 29, 24

Conread position: 68-444
Cow position:
Alignm length: 381
Alignm identity: 244
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 40

Conread position: 70-389
Cow position:
Alignm length: 333
Alignm identity: 217
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 19

Conread position: 71-447
Cow position:
Alignm length: 390
Alignm identity: 256
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 53, 63

Conread position: 71-725
Cow position:
Alignm length: 669
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 160

Conread position: 72-362
Cow position:
Alignm length: 295
Alignm identity: 201
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 73, 23

Conread position: 74-187
Cow position:
Alignm length: 116
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 98-480
Cow position:
Alignm length: 392
Alignm identity: 252
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 95, 27

Conread position: 102-422
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 90, 22

Conread position: 106-455
Cow position:
Alignm length: 359
Alignm identity: 241
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 18, 230

Conread position: 109-275
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 163

Conread position: 110-389
Cow position:
Alignm length: 285
Alignm identity: 205
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 160

Conread position: 113-760
Cow position:
Alignm length: 675
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 280

Conread position: 115-335
Cow position:
Alignm length: 230
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 172

Conread position: 115-379
Cow position:
Alignm length: 266
Alignm identity: 195
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 200, 17

Conread position: 115-444
Cow position:
Alignm length: 340
Alignm identity: 236
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 77, 0

Conread position: 117-381
Cow position:
Alignm length: 266
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 76, 17

Conread position: 118-444
Cow position:
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 20

Conread position: 120-760
Cow position:
Alignm length: 655
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 334

Conread position: 121-383
Cow position:
Alignm length: 270
Alignm identity: 193
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 71, 36

Conread position: 122-435
Cow position:
Alignm length: 323
Alignm identity: 221
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 6

Conread position: 136-760
Cow position:
Alignm length: 641
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 330

Conread position: 138-760
Cow position:
Alignm length: 638
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 327

Conread position: 139-426
Cow position:
Alignm length: 292
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 17, 72

Conread position: 145-447
Cow position:
Alignm length: 310
Alignm identity: 209
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 146-448
Cow position:
Alignm length: 314
Alignm identity: 212
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 85, 40

Conread position: 151-480
Cow position:
Alignm length: 332
Alignm identity: 219
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 12

Conread position: 170-443
Cow position:
Alignm length: 278
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 54

Conread position: 171-479
Cow position:
Alignm length: 320
Alignm identity: 223
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 28, 193

Conread position: 171-484
Cow position:
Alignm length: 325
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 134

Conread position: 195-422
Cow position:
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 10

Conread position: 198-783
Cow position:
Alignm length: 594
Alignm identity: 319
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 22, 257

Conread position: 205-448
Cow position:
Alignm length: 251
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 100

Conread position: 218-736
Cow position:
Alignm length: 527
Alignm identity: 335
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 93, 31

Conread position: 222-401
Cow position:
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 166, 56

Conread position: 222-444
Cow position:
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 167, 0

Conread position: 222-444
Cow position:
Alignm length: 224
Alignm identity: 150
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 167, 0

Conread position: 222-479
Cow position:
Alignm length: 262
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 137, 104

Conread position: 227-399
Cow position:
Alignm length: 176
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 6, 24

Conread position: 233-444
Cow position:
Alignm length: 213
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 156, 85

Conread position: 237-423
Cow position:
Alignm length: 191
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 242-444
Cow position:
Alignm length: 206
Alignm identity: 146
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 242-477
Cow position:
Alignm length: 240
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 154, 110

Conread position: 501-1224
Cow position:
Alignm length: 757
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 47

Conread position: 523-772
Cow position:
Alignm length: 259
Alignm identity: 183
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 29, 111

Conread position: 525-854
Cow position:
Alignm length: 345
Alignm identity: 240
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 27, 104

Conread position: 537-760
Cow position:
Alignm length: 232
Alignm identity: 158
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 134

Conread position: 774-1169
Cow position:
Alignm length: 416
Alignm identity: 266
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 125

Conread position: 920-1170
Cow position:
Alignm length: 255
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 129

Conread position: 925-1169
Cow position:
Alignm length: 247
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 121

Conread position: 1000-1219
Cow position:
Alignm length: 231
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 59, 145

Show alignments to all cow chromosomes.