Cow genome map

Conread name: Ss1.1-rpliv0129_b1.5.5

Conread position: 2-183
Cow position: chr6:18465733-18465554 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 32, 61

Conread position: 2-233
Cow position: chr6:32677776-32677541 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 2-274
Cow position: chr6:31010603-31010318 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 42

Conread position: 2-296
Cow position: chr6:44523067-44522788 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 24, 105

Conread position: 2-367
Cow position: chr6:32345020-32344650 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 22

Conread position: 2-416
Cow position: chr6:15479795-15480201 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 267
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 114

Conread position: 2-427
Cow position: chr6:14143304-14142871 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 287
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 25, 70

Conread position: 2-429
Cow position: chr6:14840058-14840464 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 277
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 102, 0

Conread position: 2-479
Cow position: chr6:49786637-49787119 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 77

Conread position: 2-681
Cow position: chr6:50623498-50624142 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 445
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 148

Conread position: 2-955
Cow position: chr6:1574722-1575666 (view UCSC Genome Browser custom track)
Alignm length: 984
Alignm identity: 593
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 19, 125

Conread position: 3-210
Cow position: chr6:40000300-40000093 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 142

Conread position: 3-210
Cow position: chr6:41229630-41229838 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 143

Conread position: 3-436
Cow position: chr6:33465157-33465592 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 41

Conread position: 3-442
Cow position: chr6:65660453-65660886 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 69

Conread position: 3-746
Cow position: chr6:477729-478470 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 150

Conread position: 3-757
Cow position: chr6:3887325-3886575 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 96

Conread position: 3-760
Cow position: chr6:25791510-25790765 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 70

Conread position: 3-822
Cow position: chr6:13849260-13850066 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 339

Conread position: 4-252
Cow position: chr6:19768589-19768844 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 23, 40

Conread position: 4-330
Cow position: chr6:29224968-29225295 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 16, 256

Conread position: 6-285
Cow position: chr6:57472002-57472283 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 27, 12

Conread position: 7-424
Cow position: chr6:65849717-65849296 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 289
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 54, 11

Conread position: 8-375
Cow position: chr6:3756930-3757300 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 245
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 118, 12

Conread position: 8-446
Cow position: chr6:36963223-36962787 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 291
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 80, 115

Conread position: 8-447
Cow position: chr6:39332337-39331893 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 138

Conread position: 9-298
Cow position: chr6:64771605-64771337 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 126, 11

Conread position: 10-389
Cow position: chr6:69215453-69215072 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 7

Conread position: 10-402
Cow position: chr6:1922029-1921619 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 44

Conread position: 12-224
Cow position: chr6:34029434-34029644 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 135

Conread position: 12-304
Cow position: chr6:38989595-38989303 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 55, 22

Conread position: 12-336
Cow position: chr6:10611035-10611366 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 216
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 6

Conread position: 12-363
Cow position: chr6:15925367-15925018 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 246
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 177, 109

Conread position: 12-446
Cow position: chr6:28277817-28278238 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 299
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 208, 46

Conread position: 12-457
Cow position: chr6:2542044-2542509 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 301
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 7

Conread position: 12-479
Cow position: chr6:40159303-40158833 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 108

Conread position: 12-725
Cow position: chr6:28135130-28135831 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 139

Conread position: 12-760
Cow position: chr6:17596094-17595351 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 89

Conread position: 12-763
Cow position: chr6:59618279-59619006 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 483
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 21, 6

Conread position: 13-229
Cow position: chr6:65906596-65906374 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 15, 212

Conread position: 13-291
Cow position: chr6:24046571-24046287 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 9

Conread position: 13-330
Cow position: chr6:59017112-59016791 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 46

Conread position: 13-380
Cow position: chr6:1820428-1820057 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 138

Conread position: 13-381
Cow position: chr6:43791386-43791002 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 13-389
Cow position: chr6:43667305-43666937 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 270
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 55

Conread position: 13-426
Cow position: chr6:9757435-9756999 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 261

Conread position: 13-444
Cow position: chr6:2556840-2557285 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 13-444
Cow position: chr6:32417704-32418152 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 161

Conread position: 13-447
Cow position: chr6:11723001-11722557 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 13-472
Cow position: chr6:6122098-6121642 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 70

Conread position: 13-477
Cow position: chr6:34274599-34274132 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 311
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 109, 16

Conread position: 13-479
Cow position: chr6:28171103-28171575 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 13-479
Cow position: chr6:38612339-38611878 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 156

Conread position: 13-480
Cow position: chr6:51091556-51092039 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 453

Conread position: 13-513
Cow position: chr6:44018633-44018128 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 293

Conread position: 13-740
Cow position: chr6:237656-236962 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 469
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 20, 144

Conread position: 13-760
Cow position: chr6:24241485-24242225 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 76

Conread position: 14-298
Cow position: chr6:65892520-65892223 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 194
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 43

Conread position: 14-365
Cow position: chr6:6080640-6080286 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 126

Conread position: 14-478
Cow position: chr6:11745263-11745727 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 69

Conread position: 14-642
Cow position: chr6:50655166-50655783 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 139

Conread position: 15-368
Cow position: chr6:18464074-18463721 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 237
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 113

Conread position: 20-367
Cow position: chr6:7177290-7176969 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 237
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 207, 9

Conread position: 20-435
Cow position: chr6:66746567-66747007 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 295
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 100, 0

Conread position: 20-435
Cow position: chr6:67266458-67266898 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 295
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 100, 0

Conread position: 25-424
Cow position: chr6:50112315-50112717 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 9

Conread position: 25-426
Cow position: chr6:58952892-58952504 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 279
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 260, 96

Conread position: 25-433
Cow position: chr6:7161023-7161430 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 140

Conread position: 26-176
Cow position: chr6:46479338-46479490 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 26-207
Cow position: chr6:13757932-13758116 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 26-221
Cow position: chr6:15895583-15895389 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 90, 121

Conread position: 26-261
Cow position: chr6:28177451-28177224 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 90, 139

Conread position: 26-261
Cow position: chr6:65843821-65844073 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 26-298
Cow position: chr6:33809846-33810127 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-338
Cow position: chr6:44148344-44148022 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 98, 0

Conread position: 26-342
Cow position: chr6:64813813-64813497 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 202

Conread position: 26-342
Cow position: chr6:67552691-67553012 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 292

Conread position: 26-347
Cow position: chr6:24625395-24625053 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 60, 278

Conread position: 26-371
Cow position: chr6:32002070-32001728 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 91, 126

Conread position: 26-380
Cow position: chr6:16767629-16767265 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 146

Conread position: 26-381
Cow position: chr6:52695235-52695590 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 100, 70

Conread position: 26-381
Cow position: chr6:66234011-66234369 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 23, 45

Conread position: 26-382
Cow position: chr6:1408440-1408080 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 73

Conread position: 26-384
Cow position: chr6:25361510-25361864 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 166, 24

Conread position: 26-384
Cow position: chr6:34492363-34492728 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 283

Conread position: 26-384
Cow position: chr6:34505835-34505471 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 127

Conread position: 26-390
Cow position: chr6:29281513-29281884 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 239
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 190

Conread position: 26-400
Cow position: chr6:21833431-21833058 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 98, 28

Conread position: 26-402
Cow position: chr6:2580638-2581010 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 32

Conread position: 26-402
Cow position: chr6:58603693-58604061 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 126

Conread position: 26-418
Cow position: chr6:704423-704823 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 375

Conread position: 26-418
Cow position: chr6:3151442-3151837 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 44

Conread position: 26-419
Cow position: chr6:20557736-20557340 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 94

Conread position: 26-423
Cow position: chr6:45902679-45902274 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 387

Conread position: 26-425
Cow position: chr6:40317792-40318206 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 279
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 95, 143

Conread position: 26-426
Cow position: chr6:38273789-38274188 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 91, 121

Conread position: 26-427
Cow position: chr6:6094445-6094851 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 150

Conread position: 26-432
Cow position: chr6:37478432-37478845 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 98

Conread position: 26-435
Cow position: chr6:18513764-18514163 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 125

Conread position: 26-435
Cow position: chr6:53544307-53544725 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 313

Conread position: 26-435
Cow position: chr6:66838322-66838737 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 66

Conread position: 26-438
Cow position: chr6:4509782-4510185 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 267
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 7, 44

Conread position: 26-444
Cow position: chr6:3263487-3263066 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 12

Conread position: 26-444
Cow position: chr6:5750141-5750566 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-444
Cow position: chr6:5947573-5947141 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 26-444
Cow position: chr6:16982589-16982161 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-444
Cow position: chr6:22999705-23000113 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 283
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 97, 188

Conread position: 26-444
Cow position: chr6:28186627-28186199 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-444
Cow position: chr6:40277281-40277702 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 242

Conread position: 26-444
Cow position: chr6:40864819-40864399 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-444
Cow position: chr6:42265947-42266370 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 283
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 98, 78

Conread position: 26-445
Cow position: chr6:17048518-17048945 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 120

Conread position: 26-446
Cow position: chr6:65929449-65929887 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 115, 98

Conread position: 26-447
Cow position: chr6:49364-48935 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 26-447
Cow position: chr6:1535909-1536347 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 26-447
Cow position: chr6:3486188-3485761 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 283

Conread position: 26-447
Cow position: chr6:8204388-8204817 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 120

Conread position: 26-447
Cow position: chr6:8537094-8536656 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-447
Cow position: chr6:14927670-14928100 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-447
Cow position: chr6:15138959-15138529 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-447
Cow position: chr6:18986237-18986652 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 286
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 162, 97

Conread position: 26-447
Cow position: chr6:25216512-25216936 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 130

Conread position: 26-447
Cow position: chr6:36530497-36530921 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 120

Conread position: 26-447
Cow position: chr6:47040979-47040561 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 209

Conread position: 26-447
Cow position: chr6:51716753-51717183 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 30

Conread position: 26-449
Cow position: chr6:183331-182905 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 119

Conread position: 26-459
Cow position: chr6:18751977-18751529 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 298
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 130

Conread position: 26-677
Cow position: chr6:18913268-18912628 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 392

Conread position: 26-680
Cow position: chr6:13978970-13979612 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 73

Conread position: 26-724
Cow position: chr6:46296481-46297169 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 137

Conread position: 26-746
Cow position: chr6:14133536-14132823 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 317

Conread position: 26-759
Cow position: chr6:43619945-43620664 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 53

Conread position: 26-760
Cow position: chr6:329149-328426 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 126

Conread position: 26-760
Cow position: chr6:1275786-1275055 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 368

Conread position: 26-760
Cow position: chr6:1796457-1795734 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 292

Conread position: 26-760
Cow position: chr6:2376916-2377638 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 92

Conread position: 26-760
Cow position: chr6:7139125-7138406 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 297

Conread position: 26-760
Cow position: chr6:10043425-10044149 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 292

Conread position: 26-760
Cow position: chr6:11018868-11019591 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 109

Conread position: 26-760
Cow position: chr6:12664107-12663381 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 411

Conread position: 26-760
Cow position: chr6:13309175-13308451 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 292

Conread position: 26-760
Cow position: chr6:16051082-16050356 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 264

Conread position: 26-760
Cow position: chr6:16592182-16592899 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 120

Conread position: 26-760
Cow position: chr6:19104701-19103974 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-760
Cow position: chr6:28489359-28488634 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 432

Conread position: 26-760
Cow position: chr6:37386791-37387512 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 126

Conread position: 26-760
Cow position: chr6:39911534-39912259 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 345

Conread position: 26-760
Cow position: chr6:45936474-45937232 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-760
Cow position: chr6:55237901-55238630 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 432

Conread position: 26-760
Cow position: chr6:68029386-68030113 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 126

Conread position: 26-775
Cow position: chr6:11870721-11869986 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 294

Conread position: 26-775
Cow position: chr6:34128669-34129406 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 126

Conread position: 26-775
Cow position: chr6:62663989-62664723 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 122

Conread position: 26-783
Cow position: chr6:20351883-20351131 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 441

Conread position: 26-1138
Cow position: chr6:31587054-31585933 (view UCSC Genome Browser custom track)
Alignm length: 1122
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 26-1219
Cow position: chr6:61052888-61051685 (view UCSC Genome Browser custom track)
Alignm length: 1204
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 27-234
Cow position: chr6:28138968-28139177 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 70, 65

Conread position: 27-258
Cow position: chr6:19018318-19018553 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 6, 90

Conread position: 27-377
Cow position: chr6:12628138-12628484 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 237
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 165, 19

Conread position: 27-381
Cow position: chr6:3685102-3685464 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 124

Conread position: 27-422
Cow position: chr6:59595466-59595865 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 273
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 97, 125

Conread position: 27-436
Cow position: chr6:6186453-6186863 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 95, 108

Conread position: 27-436
Cow position: chr6:65936448-65936025 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 288
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 59, 274

Conread position: 27-444
Cow position: chr6:26776964-26776551 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 279
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 6, 191

Conread position: 27-444
Cow position: chr6:28103649-28103229 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 127

Conread position: 27-444
Cow position: chr6:28702489-28702075 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 70

Conread position: 27-444
Cow position: chr6:50570414-50570836 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 120

Conread position: 27-445
Cow position: chr6:46234273-46233871 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 54, 119

Conread position: 27-447
Cow position: chr6:38874449-38874021 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 120

Conread position: 27-738
Cow position: chr6:51732291-51732993 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 119

Conread position: 27-758
Cow position: chr6:62577974-62577250 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 133

Conread position: 27-760
Cow position: chr6:27152233-27151507 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 440

Conread position: 27-760
Cow position: chr6:40974394-40975120 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 233

Conread position: 27-760
Cow position: chr6:50486588-50485839 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 432

Conread position: 28-381
Cow position: chr6:1107017-1106658 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 245
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 94, 61

Conread position: 28-479
Cow position: chr6:65896740-65896277 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 298
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 41, 140

Conread position: 29-292
Cow position: chr6:40552364-40552098 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 160, 120

Conread position: 29-440
Cow position: chr6:30272678-30272257 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 29-760
Cow position: chr6:916254-916977 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 401

Conread position: 29-760
Cow position: chr6:39435709-39434982 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 47

Conread position: 29-760
Cow position: chr6:64718532-64719252 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 408

Conread position: 31-757
Cow position: chr6:35874497-35873783 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 142

Conread position: 32-210
Cow position: chr6:21974878-21975056 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 113

Conread position: 32-381
Cow position: chr6:43777476-43777824 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 240
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 156, 103

Conread position: 32-443
Cow position: chr6:41676153-41676571 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 43

Conread position: 32-477
Cow position: chr6:6439024-6439474 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 300
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 23, 41

Conread position: 33-436
Cow position: chr6:6184748-6184344 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 282
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 89, 102

Conread position: 34-288
Cow position: chr6:26653106-26653367 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 82, 118

Conread position: 34-447
Cow position: chr6:51149156-51149579 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 106

Conread position: 34-757
Cow position: chr6:66547676-66548405 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 37

Conread position: 35-444
Cow position: chr6:17888713-17888300 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 90

Conread position: 35-760
Cow position: chr6:27474637-27475346 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 109

Conread position: 35-760
Cow position: chr6:55540054-55539336 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 423

Conread position: 35-760
Cow position: chr6:63705424-63704712 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 31

Conread position: 36-384
Cow position: chr6:62314632-62314979 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 243
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 116

Conread position: 37-746
Cow position: chr6:27527770-27527067 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 403

Conread position: 38-444
Cow position: chr6:51910306-51910711 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 37

Conread position: 43-342
Cow position: chr6:32509649-32509352 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 47, 57

Conread position: 45-379
Cow position: chr6:10645915-10646251 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 31

Conread position: 46-381
Cow position: chr6:43185247-43185585 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 231
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 52

Conread position: 46-398
Cow position: chr6:6158897-6159262 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 71, 67

Conread position: 50-400
Cow position: chr6:174435-174775 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 65, 16

Conread position: 55-457
Cow position: chr6:9265088-9264684 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 221

Conread position: 66-750
Cow position: chr6:24481247-24480593 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 437
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 69

Conread position: 68-475
Cow position: chr6:47615651-47615242 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 271
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 53, 110

Conread position: 72-435
Cow position: chr6:11164267-11163912 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 24

Conread position: 74-760
Cow position: chr6:28064252-28064925 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 207

Conread position: 74-760
Cow position: chr6:60378417-60379097 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 393

Conread position: 75-296
Cow position: chr6:61894863-61894634 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 132

Conread position: 75-711
Cow position: chr6:16521667-16521045 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 76-381
Cow position: chr6:29314373-29314678 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 70

Conread position: 84-409
Cow position: chr6:66189504-66189182 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 32, 91

Conread position: 95-443
Cow position: chr6:1097571-1097226 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 29

Conread position: 96-760
Cow position: chr6:1508225-1507576 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 200

Conread position: 98-435
Cow position: chr6:3573064-3573410 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 237
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 57

Conread position: 98-435
Cow position: chr6:60168269-60167924 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 32, 159

Conread position: 98-444
Cow position: chr6:15278274-15277914 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 0

Conread position: 99-760
Cow position: chr6:50720395-50721032 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 155

Conread position: 100-507
Cow position: chr6:6162420-6162836 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 280
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 26, 53

Conread position: 102-424
Cow position: chr6:18496606-18496933 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 245

Conread position: 113-444
Cow position: chr6:39349688-39350027 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 113-760
Cow position: chr6:28400949-28400317 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 203

Conread position: 115-435
Cow position: chr6:617463-617785 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 91

Conread position: 115-446
Cow position: chr6:43331085-43330772 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 34

Conread position: 115-740
Cow position: chr6:30806580-30805960 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 415
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 27, 13

Conread position: 116-480
Cow position: chr6:59974258-59973874 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 258
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 131

Conread position: 117-381
Cow position: chr6:43104622-43104365 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 73

Conread position: 117-444
Cow position: chr6:32659235-32658918 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 15

Conread position: 120-462
Cow position: chr6:28550767-28550424 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 39, 106

Conread position: 120-463
Cow position: chr6:51025305-51025642 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 105, 24

Conread position: 121-446
Cow position: chr6:62488164-62487852 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 267, 65

Conread position: 125-760
Cow position: chr6:25375784-25375160 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 329

Conread position: 128-458
Cow position: chr6:55901560-55901893 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 65, 22

Conread position: 130-427
Cow position: chr6:14502140-14502447 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 62, 0

Conread position: 131-760
Cow position: chr6:12971605-12970983 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 335

Conread position: 133-482
Cow position: chr6:31950999-31951353 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 56, 140

Conread position: 133-746
Cow position: chr6:33810113-33810711 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 328
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 256, 325

Conread position: 138-382
Cow position: chr6:1403739-1403492 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 51, 178

Conread position: 138-444
Cow position: chr6:35417591-35417285 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 48

Conread position: 146-760
Cow position: chr6:41390124-41389512 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 319

Conread position: 146-760
Cow position: chr6:65820254-65819646 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 310

Conread position: 149-778
Cow position: chr6:39956405-39957015 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 59

Conread position: 151-400
Cow position: chr6:1054073-1053827 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 79, 54

Conread position: 153-422
Cow position: chr6:61160531-61160808 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 12

Conread position: 153-434
Cow position: chr6:69144736-69145019 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 60

Conread position: 153-479
Cow position: chr6:17694894-17694574 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 9

Conread position: 157-434
Cow position: chr6:25803654-25803369 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 158-760
Cow position: chr6:28002041-28001442 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 299

Conread position: 160-479
Cow position: chr6:35723754-35724072 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 33, 221

Conread position: 162-435
Cow position: chr6:66561874-66562152 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 165-655
Cow position: chr6:31813650-31813173 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 300

Conread position: 177-479
Cow position: chr6:7192182-7191875 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 202
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 159, 9

Conread position: 178-456
Cow position: chr6:12513891-12514164 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 28

Conread position: 178-781
Cow position: chr6:9840776-9840173 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 395
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 14, 154

Conread position: 189-479
Cow position: chr6:34237644-34237346 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 193
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 145

Conread position: 201-760
Cow position: chr6:40000068-39999523 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 250

Conread position: 216-1168
Cow position: chr6:37385560-37386525 (view UCSC Genome Browser custom track)
Alignm length: 1000
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 118

Conread position: 218-783
Cow position: chr6:28845724-28845177 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 354
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 240, 62

Conread position: 220-398
Cow position: chr6:32677518-32677340 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 168, 137

Conread position: 222-398
Cow position: chr6:662525-662348 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 222-419
Cow position: chr6:18572611-18572413 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 134, 189

Conread position: 222-444
Cow position: chr6:26326015-26325792 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 167, 0

Conread position: 222-478
Cow position: chr6:27941148-27941408 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 166, 120

Conread position: 222-760
Cow position: chr6:45590960-45591482 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 354
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 167, 225

Conread position: 227-477
Cow position: chr6:65396594-65396851 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 157, 72

Conread position: 228-435
Cow position: chr6:6720412-6720613 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 156, 102

Conread position: 228-435
Cow position: chr6:41414891-41414685 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 117, 15

Conread position: 228-447
Cow position: chr6:3273059-3272842 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 161, 79

Conread position: 230-463
Cow position: chr6:31528620-31528843 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 73, 26

Conread position: 232-479
Cow position: chr6:10678244-10678502 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 234-444
Cow position: chr6:22738274-22738063 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 155, 0

Conread position: 239-426
Cow position: chr6:1734502-1734689 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 150, 180

Conread position: 239-762
Cow position: chr6:60875726-60876235 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 340
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 150, 210

Conread position: 243-479
Cow position: chr6:21975384-21975625 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 253-447
Cow position: chr6:65844350-65844545 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 0

Conread position: 256-443
Cow position: chr6:32488464-32488288 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 133, 22

Conread position: 282-479
Cow position: chr6:7047515-7047715 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 150

Conread position: 286-760
Cow position: chr6:26668549-26668089 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 319
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 103, 144

Conread position: 291-760
Cow position: chr6:35967986-35967532 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 310
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 98, 167

Conread position: 302-759
Cow position: chr6:28159910-28160342 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 295
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 132

Conread position: 495-1222
Cow position: chr6:35724059-35724825 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 500
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 111

Conread position: 495-1224
Cow position: chr6:10365582-10364816 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 504
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 34, 10

Conread position: 496-737
Cow position: chr6:32344603-32344358 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 213

Conread position: 511-819
Cow position: chr6:53100033-53100344 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 57

Conread position: 518-738
Cow position: chr6:17888253-17888030 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 61

Conread position: 521-685
Cow position: chr6:19493810-19493977 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 78

Conread position: 526-685
Cow position: chr6:9264641-9264482 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 67

Conread position: 526-740
Cow position: chr6:61002433-61002645 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 24

Conread position: 526-741
Cow position: chr6:19769303-19769515 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 144

Conread position: 526-750
Cow position: chr6:7941093-7940865 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 179

Conread position: 526-1221
Cow position: chr6:32488230-32487503 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 480
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 26, 224

Conread position: 537-760
Cow position: chr6:22679559-22679789 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 134

Conread position: 537-760
Cow position: chr6:36230822-36230592 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 134

Conread position: 537-760
Cow position: chr6:45975213-45975443 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 537-760
Cow position: chr6:66189096-66188866 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 16, 134

Conread position: 548-965
Cow position: chr6:20611955-20611545 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 279
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 31

Conread position: 554-760
Cow position: chr6:31913453-31913241 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 116

Conread position: 621-1134
Cow position: chr6:31226264-31226805 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 358
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 58, 18

Conread position: 883-1170
Cow position: chr6:23529028-23529328 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 24

Conread position: 883-1221
Cow position: chr6:31304109-31304460 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 240
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 62, 55

Conread position: 884-1222
Cow position: chr6:7161860-7162197 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 19, 26

Conread position: 888-1170
Cow position: chr6:47614745-47614461 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 68, 190

Conread position: 888-1170
Cow position: chr6:57395653-57395940 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 188
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 88

Conread position: 888-1224
Cow position: chr6:19243124-19243481 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 68, 170

Conread position: 949-1223
Cow position: chr6:41318005-41317731 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 184
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 142

Conread position: 1047-1213
Cow position: chr6:2325057-2324891 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 125, 21

Show alignments to all cow chromosomes.