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Cow genome map

           
Conread name:
           
Ss1.1-rpliv0129_b1.5.5
        

               
Conread position:
               
2-183
               

               
Cow position:
               
chr6:18465733-18465554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr6:32677776-32677541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr6:31010603-31010318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr6:44523067-44522788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr6:32345020-32344650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
2-416
               

               
Cow position:
               
chr6:15479795-15480201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr6:14143304-14142871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr6:14840058-14840464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
2-479
               

               
Cow position:
               
chr6:49786637-49787119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
2-681
               

               
Cow position:
               
chr6:50623498-50624142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
31, 148
               

               
Conread position:
               
2-955
               

               
Cow position:
               
chr6:1574722-1575666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
984
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr6:40000300-40000093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr6:41229630-41229838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 143
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chr6:33465157-33465592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
3-442
               

               
Cow position:
               
chr6:65660453-65660886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
3-746
               

               
Cow position:
               
chr6:477729-478470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
3-757
               

               
Cow position:
               
chr6:3887325-3886575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
3-760
               

               
Cow position:
               
chr6:25791510-25790765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
3-822
               

               
Cow position:
               
chr6:13849260-13850066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 339
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr6:19768589-19768844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr6:29224968-29225295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
16, 256
               

               
Conread position:
               
6-285
               

               
Cow position:
               
chr6:57472002-57472283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
7-424
               

               
Cow position:
               
chr6:65849717-65849296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
8-375
               

               
Cow position:
               
chr6:3756930-3757300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
8-446
               

               
Cow position:
               
chr6:36963223-36962787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
8-447
               

               
Cow position:
               
chr6:39332337-39331893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 138
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chr6:64771605-64771337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
10-389
               

               
Cow position:
               
chr6:69215453-69215072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
10-402
               

               
Cow position:
               
chr6:1922029-1921619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr6:34029434-34029644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 135
               

               
Conread position:
               
12-304
               

               
Cow position:
               
chr6:38989595-38989303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
12-336
               

               
Cow position:
               
chr6:10611035-10611366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
12-363
               

               
Cow position:
               
chr6:15925367-15925018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
177, 109
               

               
Conread position:
               
12-446
               

               
Cow position:
               
chr6:28277817-28278238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
208, 46
               

               
Conread position:
               
12-457
               

               
Cow position:
               
chr6:2542044-2542509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
12-479
               

               
Cow position:
               
chr6:40159303-40158833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 108
               

               
Conread position:
               
12-725
               

               
Cow position:
               
chr6:28135130-28135831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
12-760
               

               
Cow position:
               
chr6:17596094-17595351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
12-763
               

               
Cow position:
               
chr6:59618279-59619006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
13-229
               

               
Cow position:
               
chr6:65906596-65906374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
15, 212
               

               
Conread position:
               
13-291
               

               
Cow position:
               
chr6:24046571-24046287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
13-330
               

               
Cow position:
               
chr6:59017112-59016791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
13-380
               

               
Cow position:
               
chr6:1820428-1820057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chr6:43791386-43791002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
13-389
               

               
Cow position:
               
chr6:43667305-43666937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
13-426
               

               
Cow position:
               
chr6:9757435-9756999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
22, 261
               

               
Conread position:
               
13-444
               

               
Cow position:
               
chr6:2556840-2557285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
13-444
               

               
Cow position:
               
chr6:32417704-32418152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
13-447
               

               
Cow position:
               
chr6:11723001-11722557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
13-472
               

               
Cow position:
               
chr6:6122098-6121642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
13-477
               

               
Cow position:
               
chr6:34274599-34274132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr6:28171103-28171575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr6:38612339-38611878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
13-480
               

               
Cow position:
               
chr6:51091556-51092039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 453
               

               
Conread position:
               
13-513
               

               
Cow position:
               
chr6:44018633-44018128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 293
               

               
Conread position:
               
13-740
               

               
Cow position:
               
chr6:237656-236962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 144
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chr6:24241485-24242225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr6:65892520-65892223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
14-365
               

               
Cow position:
               
chr6:6080640-6080286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
14-478
               

               
Cow position:
               
chr6:11745263-11745727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
14-642
               

               
Cow position:
               
chr6:50655166-50655783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
15-368
               

               
Cow position:
               
chr6:18464074-18463721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 113
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr6:7177290-7176969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
207, 9
               

               
Conread position:
               
20-435
               

               
Cow position:
               
chr6:66746567-66747007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
20-435
               

               
Cow position:
               
chr6:67266458-67266898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
25-424
               

               
Cow position:
               
chr6:50112315-50112717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
25-426
               

               
Cow position:
               
chr6:58952892-58952504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
260, 96
               

               
Conread position:
               
25-433
               

               
Cow position:
               
chr6:7161023-7161430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 140
               

               
Conread position:
               
26-176
               

               
Cow position:
               
chr6:46479338-46479490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr6:13757932-13758116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-221
               

               
Cow position:
               
chr6:15895583-15895389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
26-261
               

               
Cow position:
               
chr6:28177451-28177224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
90, 139
               

               
Conread position:
               
26-261
               

               
Cow position:
               
chr6:65843821-65844073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
26-298
               

               
Cow position:
               
chr6:33809846-33810127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-338
               

               
Cow position:
               
chr6:44148344-44148022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-342
               

               
Cow position:
               
chr6:64813813-64813497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 202
               

               
Conread position:
               
26-342
               

               
Cow position:
               
chr6:67552691-67553012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 292
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr6:24625395-24625053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 278
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chr6:32002070-32001728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
91, 126
               

               
Conread position:
               
26-380
               

               
Cow position:
               
chr6:16767629-16767265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 146
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr6:52695235-52695590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
100, 70
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr6:66234011-66234369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chr6:1408440-1408080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chr6:25361510-25361864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 24
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chr6:34492363-34492728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 283
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chr6:34505835-34505471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 127
               

               
Conread position:
               
26-390
               

               
Cow position:
               
chr6:29281513-29281884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 190
               

               
Conread position:
               
26-400
               

               
Cow position:
               
chr6:21833431-21833058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
26-402
               

               
Cow position:
               
chr6:2580638-2581010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 32
               

               
Conread position:
               
26-402
               

               
Cow position:
               
chr6:58603693-58604061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 126
               

               
Conread position:
               
26-418
               

               
Cow position:
               
chr6:704423-704823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 375
               

               
Conread position:
               
26-418
               

               
Cow position:
               
chr6:3151442-3151837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
26-419
               

               
Cow position:
               
chr6:20557736-20557340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 94
               

               
Conread position:
               
26-423
               

               
Cow position:
               
chr6:45902679-45902274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 387
               

               
Conread position:
               
26-425
               

               
Cow position:
               
chr6:40317792-40318206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
95, 143
               

               
Conread position:
               
26-426
               

               
Cow position:
               
chr6:38273789-38274188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
26-427
               

               
Cow position:
               
chr6:6094445-6094851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 150
               

               
Conread position:
               
26-432
               

               
Cow position:
               
chr6:37478432-37478845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 98
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr6:18513764-18514163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 125
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr6:53544307-53544725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 313
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chr6:66838322-66838737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
26-438
               

               
Cow position:
               
chr6:4509782-4510185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:3263487-3263066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:5750141-5750566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:5947573-5947141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:16982589-16982161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:22999705-23000113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
97, 188
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:28186627-28186199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:40277281-40277702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 242
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:40864819-40864399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr6:42265947-42266370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
98, 78
               

               
Conread position:
               
26-445
               

               
Cow position:
               
chr6:17048518-17048945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
26-446
               

               
Cow position:
               
chr6:65929449-65929887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
115, 98
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:49364-48935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 78
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:1535909-1536347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:3486188-3485761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 283
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:8204388-8204817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 120
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:8537094-8536656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:14927670-14928100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:15138959-15138529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:18986237-18986652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
162, 97
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:25216512-25216936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 130
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:36530497-36530921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:47040979-47040561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 209
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chr6:51716753-51717183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
26-449
               

               
Cow position:
               
chr6:183331-182905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 119
               

               
Conread position:
               
26-459
               

               
Cow position:
               
chr6:18751977-18751529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
7, 130
               

               
Conread position:
               
26-677
               

               
Cow position:
               
chr6:18913268-18912628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 392
               

               
Conread position:
               
26-680
               

               
Cow position:
               
chr6:13978970-13979612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
26-724
               

               
Cow position:
               
chr6:46296481-46297169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 137
               

               
Conread position:
               
26-746
               

               
Cow position:
               
chr6:14133536-14132823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 317
               

               
Conread position:
               
26-759
               

               
Cow position:
               
chr6:43619945-43620664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:329149-328426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:1275786-1275055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 368
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:1796457-1795734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 292
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:2376916-2377638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 92
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:7139125-7138406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 297
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:10043425-10044149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 292
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:11018868-11019591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 109
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:12664107-12663381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 411
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:13309175-13308451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 292
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:16051082-16050356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 264
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:16592182-16592899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:19104701-19103974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:28489359-28488634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 432
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:37386791-37387512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:39911534-39912259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 345
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:45936474-45937232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:55237901-55238630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 432
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chr6:68029386-68030113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 126
               

               
Conread position:
               
26-775
               

               
Cow position:
               
chr6:11870721-11869986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 294
               

               
Conread position:
               
26-775
               

               
Cow position:
               
chr6:34128669-34129406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-775
               

               
Cow position:
               
chr6:62663989-62664723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
26-783
               

               
Cow position:
               
chr6:20351883-20351131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 441
               

               
Conread position:
               
26-1138
               

               
Cow position:
               
chr6:31587054-31585933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1122
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-1219
               

               
Cow position:
               
chr6:61052888-61051685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1204
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
27-234
               

               
Cow position:
               
chr6:28138968-28139177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
27-258
               

               
Cow position:
               
chr6:19018318-19018553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
6, 90
               

               
Conread position:
               
27-377
               

               
Cow position:
               
chr6:12628138-12628484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
165, 19
               

               
Conread position:
               
27-381
               

               
Cow position:
               
chr6:3685102-3685464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
27-422
               

               
Cow position:
               
chr6:59595466-59595865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
97, 125
               

               
Conread position:
               
27-436
               

               
Cow position:
               
chr6:6186453-6186863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
95, 108
               

               
Conread position:
               
27-436
               

               
Cow position:
               
chr6:65936448-65936025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
59, 274
               

               
Conread position:
               
27-444
               

               
Cow position:
               
chr6:26776964-26776551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
6, 191
               

               
Conread position:
               
27-444
               

               
Cow position:
               
chr6:28103649-28103229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 127
               

               
Conread position:
               
27-444
               

               
Cow position:
               
chr6:28702489-28702075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
27-444
               

               
Cow position:
               
chr6:50570414-50570836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
27-445
               

               
Cow position:
               
chr6:46234273-46233871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
27-447
               

               
Cow position:
               
chr6:38874449-38874021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 120
               

               
Conread position:
               
27-738
               

               
Cow position:
               
chr6:51732291-51732993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 119
               

               
Conread position:
               
27-758
               

               
Cow position:
               
chr6:62577974-62577250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
27-760
               

               
Cow position:
               
chr6:27152233-27151507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 440
               

               
Conread position:
               
27-760
               

               
Cow position:
               
chr6:40974394-40975120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 233
               

               
Conread position:
               
27-760
               

               
Cow position:
               
chr6:50486588-50485839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 432
               

               
Conread position:
               
28-381
               

               
Cow position:
               
chr6:1107017-1106658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
28-479
               

               
Cow position:
               
chr6:65896740-65896277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
29-292
               

               
Cow position:
               
chr6:40552364-40552098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 120
               

               
Conread position:
               
29-440
               

               
Cow position:
               
chr6:30272678-30272257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
29-760
               

               
Cow position:
               
chr6:916254-916977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 401
               

               
Conread position:
               
29-760
               

               
Cow position:
               
chr6:39435709-39434982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
29-760
               

               
Cow position:
               
chr6:64718532-64719252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 408
               

               
Conread position:
               
31-757
               

               
Cow position:
               
chr6:35874497-35873783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 142
               

               
Conread position:
               
32-210
               

               
Cow position:
               
chr6:21974878-21975056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
32-381
               

               
Cow position:
               
chr6:43777476-43777824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
156, 103
               

               
Conread position:
               
32-443
               

               
Cow position:
               
chr6:41676153-41676571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
32-477
               

               
Cow position:
               
chr6:6439024-6439474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
33-436
               

               
Cow position:
               
chr6:6184748-6184344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
89, 102
               

               
Conread position:
               
34-288
               

               
Cow position:
               
chr6:26653106-26653367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 118
               

               
Conread position:
               
34-447
               

               
Cow position:
               
chr6:51149156-51149579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
34-757
               

               
Cow position:
               
chr6:66547676-66548405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
35-444
               

               
Cow position:
               
chr6:17888713-17888300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 90
               

               
Conread position:
               
35-760
               

               
Cow position:
               
chr6:27474637-27475346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 109
               

               
Conread position:
               
35-760
               

               
Cow position:
               
chr6:55540054-55539336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 423
               

               
Conread position:
               
35-760
               

               
Cow position:
               
chr6:63705424-63704712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 31
               

               
Conread position:
               
36-384
               

               
Cow position:
               
chr6:62314632-62314979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
37-746
               

               
Cow position:
               
chr6:27527770-27527067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 403
               

               
Conread position:
               
38-444
               

               
Cow position:
               
chr6:51910306-51910711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
43-342
               

               
Cow position:
               
chr6:32509649-32509352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
45-379
               

               
Cow position:
               
chr6:10645915-10646251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
46-381
               

               
Cow position:
               
chr6:43185247-43185585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
46-398
               

               
Cow position:
               
chr6:6158897-6159262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
71, 67
               

               
Conread position:
               
50-400
               

               
Cow position:
               
chr6:174435-174775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
55-457
               

               
Cow position:
               
chr6:9265088-9264684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 221
               

               
Conread position:
               
66-750
               

               
Cow position:
               
chr6:24481247-24480593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
68-475
               

               
Cow position:
               
chr6:47615651-47615242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
72-435
               

               
Cow position:
               
chr6:11164267-11163912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
74-760
               

               
Cow position:
               
chr6:28064252-28064925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 207
               

               
Conread position:
               
74-760
               

               
Cow position:
               
chr6:60378417-60379097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 393
               

               
Conread position:
               
75-296
               

               
Cow position:
               
chr6:61894863-61894634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
75-711
               

               
Cow position:
               
chr6:16521667-16521045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr6:29314373-29314678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
84-409
               

               
Cow position:
               
chr6:66189504-66189182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 91
               

               
Conread position:
               
95-443
               

               
Cow position:
               
chr6:1097571-1097226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
96-760
               

               
Cow position:
               
chr6:1508225-1507576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 200
               

               
Conread position:
               
98-435
               

               
Cow position:
               
chr6:3573064-3573410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
98-435
               

               
Cow position:
               
chr6:60168269-60167924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
32, 159
               

               
Conread position:
               
98-444
               

               
Cow position:
               
chr6:15278274-15277914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
99-760
               

               
Cow position:
               
chr6:50720395-50721032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
100-507
               

               
Cow position:
               
chr6:6162420-6162836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
102-424
               

               
Cow position:
               
chr6:18496606-18496933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 245
               

               
Conread position:
               
113-444
               

               
Cow position:
               
chr6:39349688-39350027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
113-760
               

               
Cow position:
               
chr6:28400949-28400317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 203
               

               
Conread position:
               
115-435
               

               
Cow position:
               
chr6:617463-617785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 91
               

               
Conread position:
               
115-446
               

               
Cow position:
               
chr6:43331085-43330772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
115-740
               

               
Cow position:
               
chr6:30806580-30805960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
116-480
               

               
Cow position:
               
chr6:59974258-59973874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 131
               

               
Conread position:
               
117-381
               

               
Cow position:
               
chr6:43104622-43104365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
117-444
               

               
Cow position:
               
chr6:32659235-32658918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
120-462
               

               
Cow position:
               
chr6:28550767-28550424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
120-463
               

               
Cow position:
               
chr6:51025305-51025642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
121-446
               

               
Cow position:
               
chr6:62488164-62487852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
267, 65
               

               
Conread position:
               
125-760
               

               
Cow position:
               
chr6:25375784-25375160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 329
               

               
Conread position:
               
128-458
               

               
Cow position:
               
chr6:55901560-55901893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
130-427
               

               
Cow position:
               
chr6:14502140-14502447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
131-760
               

               
Cow position:
               
chr6:12971605-12970983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 335
               

               
Conread position:
               
133-482
               

               
Cow position:
               
chr6:31950999-31951353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 140
               

               
Conread position:
               
133-746
               

               
Cow position:
               
chr6:33810113-33810711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
256, 325
               

               
Conread position:
               
138-382
               

               
Cow position:
               
chr6:1403739-1403492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 178
               

               
Conread position:
               
138-444
               

               
Cow position:
               
chr6:35417591-35417285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
146-760
               

               
Cow position:
               
chr6:41390124-41389512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 319
               

               
Conread position:
               
146-760
               

               
Cow position:
               
chr6:65820254-65819646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 310
               

               
Conread position:
               
149-778
               

               
Cow position:
               
chr6:39956405-39957015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
151-400
               

               
Cow position:
               
chr6:1054073-1053827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
153-422
               

               
Cow position:
               
chr6:61160531-61160808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
153-434
               

               
Cow position:
               
chr6:69144736-69145019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
153-479
               

               
Cow position:
               
chr6:17694894-17694574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
157-434
               

               
Cow position:
               
chr6:25803654-25803369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
158-760
               

               
Cow position:
               
chr6:28002041-28001442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 299
               

               
Conread position:
               
160-479
               

               
Cow position:
               
chr6:35723754-35724072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 221
               

               
Conread position:
               
162-435
               

               
Cow position:
               
chr6:66561874-66562152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
165-655
               

               
Cow position:
               
chr6:31813650-31813173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 300
               

               
Conread position:
               
177-479
               

               
Cow position:
               
chr6:7192182-7191875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
159, 9
               

               
Conread position:
               
178-456
               

               
Cow position:
               
chr6:12513891-12514164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
178-781
               

               
Cow position:
               
chr6:9840776-9840173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
189-479
               

               
Cow position:
               
chr6:34237644-34237346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 145
               

               
Conread position:
               
201-760
               

               
Cow position:
               
chr6:40000068-39999523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 250
               

               
Conread position:
               
216-1168
               

               
Cow position:
               
chr6:37385560-37386525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1000
               

               
Alignm identity:
               
631
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 118
               

               
Conread position:
               
218-783
               

               
Cow position:
               
chr6:28845724-28845177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
240, 62
               

               
Conread position:
               
220-398
               

               
Cow position:
               
chr6:32677518-32677340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
168, 137
               

               
Conread position:
               
222-398
               

               
Cow position:
               
chr6:662525-662348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
222-419
               

               
Cow position:
               
chr6:18572611-18572413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
134, 189
               

               
Conread position:
               
222-444
               

               
Cow position:
               
chr6:26326015-26325792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
222-478
               

               
Cow position:
               
chr6:27941148-27941408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
166, 120
               

               
Conread position:
               
222-760
               

               
Cow position:
               
chr6:45590960-45591482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
167, 225
               

               
Conread position:
               
227-477
               

               
Cow position:
               
chr6:65396594-65396851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 72
               

               
Conread position:
               
228-435
               

               
Cow position:
               
chr6:6720412-6720613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
156, 102
               

               
Conread position:
               
228-435
               

               
Cow position:
               
chr6:41414891-41414685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
228-447
               

               
Cow position:
               
chr6:3273059-3272842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
161, 79
               

               
Conread position:
               
230-463
               

               
Cow position:
               
chr6:31528620-31528843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
232-479
               

               
Cow position:
               
chr6:10678244-10678502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
234-444
               

               
Cow position:
               
chr6:22738274-22738063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
239-426
               

               
Cow position:
               
chr6:1734502-1734689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
150, 180
               

               
Conread position:
               
239-762
               

               
Cow position:
               
chr6:60875726-60876235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
150, 210
               

               
Conread position:
               
243-479
               

               
Cow position:
               
chr6:21975384-21975625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
253-447
               

               
Cow position:
               
chr6:65844350-65844545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
256-443
               

               
Cow position:
               
chr6:32488464-32488288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 22
               

               
Conread position:
               
282-479
               

               
Cow position:
               
chr6:7047515-7047715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 150
               

               
Conread position:
               
286-760
               

               
Cow position:
               
chr6:26668549-26668089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
103, 144
               

               
Conread position:
               
291-760
               

               
Cow position:
               
chr6:35967986-35967532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
98, 167
               

               
Conread position:
               
302-759
               

               
Cow position:
               
chr6:28159910-28160342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 132
               

               
Conread position:
               
495-1222
               

               
Cow position:
               
chr6:35724059-35724825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
787
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
495-1224
               

               
Cow position:
               
chr6:10365582-10364816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
496-737
               

               
Cow position:
               
chr6:32344603-32344358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 213
               

               
Conread position:
               
511-819
               

               
Cow position:
               
chr6:53100033-53100344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chr6:17888253-17888030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
521-685
               

               
Cow position:
               
chr6:19493810-19493977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
526-685
               

               
Cow position:
               
chr6:9264641-9264482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
526-740
               

               
Cow position:
               
chr6:61002433-61002645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
526-741
               

               
Cow position:
               
chr6:19769303-19769515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
526-750
               

               
Cow position:
               
chr6:7941093-7940865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 179
               

               
Conread position:
               
526-1221
               

               
Cow position:
               
chr6:32488230-32487503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 224
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chr6:22679559-22679789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chr6:36230822-36230592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chr6:45975213-45975443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chr6:66189096-66188866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
548-965
               

               
Cow position:
               
chr6:20611955-20611545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
554-760
               

               
Cow position:
               
chr6:31913453-31913241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
621-1134
               

               
Cow position:
               
chr6:31226264-31226805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
883-1170
               

               
Cow position:
               
chr6:23529028-23529328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
883-1221
               

               
Cow position:
               
chr6:31304109-31304460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
884-1222
               

               
Cow position:
               
chr6:7161860-7162197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
888-1170
               

               
Cow position:
               
chr6:47614745-47614461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 190
               

               
Conread position:
               
888-1170
               

               
Cow position:
               
chr6:57395653-57395940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
888-1224
               

               
Cow position:
               
chr6:19243124-19243481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
68, 170
               

               
Conread position:
               
949-1223
               

               
Cow position:
               
chr6:41318005-41317731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
116, 142
               

               
Conread position:
               
1047-1213
               

               
Cow position:
               
chr6:2325057-2324891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 21
               
Show alignments to all cow chromosomes.