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Cow genome map

           
Conread name:
           
Ss1.1-rpliv0129_b1.5.5
        

               
Conread position:
               
1-272
               

               
Cow position:
               
chrX:38235689-38235413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:36546758-36546357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chrX:20759816-20759633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chrX:29156928-29157143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:37954907-37955146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chrX:16539288-16539547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chrX:27388265-27387999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chrX:5650206-5649931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chrX:26769690-26769407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chrX:13901235-13900961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chrX:25928964-25929245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chrX:6779569-6779856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:22597876-22597596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chrX:16036412-16036100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chrX:20507803-20508112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chrX:23848836-23849168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chrX:13653325-13653703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 191
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chrX:30071911-30072299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 188
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chrX:13080729-13080341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chrX:30067668-30067280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chrX:5875691-5876091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 148
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chrX:25406730-25406292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 163
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chrX:32328234-32328668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
2-444
               

               
Cow position:
               
chrX:514535-514986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 110
               

               
Conread position:
               
2-447
               

               
Cow position:
               
chrX:33536604-33537073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-447
               

               
Cow position:
               
chrX:37073596-37073143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 154
               

               
Conread position:
               
2-458
               

               
Cow position:
               
chrX:24167229-24166795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chrX:5668700-5668239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
2-479
               

               
Cow position:
               
chrX:43791134-43790638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 329
               

               
Conread position:
               
2-480
               

               
Cow position:
               
chrX:13140501-13140045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
2-480
               

               
Cow position:
               
chrX:24807527-24807046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 298
               

               
Conread position:
               
2-486
               

               
Cow position:
               
chrX:163942-164428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
2-740
               

               
Cow position:
               
chrX:34007805-34008534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 434
               

               
Conread position:
               
2-775
               

               
Cow position:
               
chrX:5360031-5360795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
793
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chrX:16464218-16464483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:24996977-24996675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
120, 81
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chrX:9912915-9912608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
3-341
               

               
Cow position:
               
chrX:15144175-15143833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 170
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chrX:15040523-15040105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chrX:39561911-39561494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chrX:27317269-27317702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chrX:30112145-30112605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chrX:16277674-16278130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chrX:20741606-20741153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 269
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chrX:21591313-21591768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 148
               

               
Conread position:
               
3-760
               

               
Cow position:
               
chrX:6579964-6580706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 393
               

               
Conread position:
               
3-760
               

               
Cow position:
               
chrX:31494755-31495508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 460
               

               
Conread position:
               
3-760
               

               
Cow position:
               
chrX:37814170-37814922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 456
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chrX:26278908-26278701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chrX:11580290-11580073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
111, 91
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chrX:33996425-33996741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chrX:30977019-30976680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chrX:15577241-15576893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
4-480
               

               
Cow position:
               
chrX:26342157-26341689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chrX:28520571-28520196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 7
               

               
Conread position:
               
5-740
               

               
Cow position:
               
chrX:13055799-13056542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 7
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chrX:37820184-37820598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
8-346
               

               
Cow position:
               
chrX:17665771-17665422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
11-418
               

               
Cow position:
               
chrX:45417571-45417156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
11-458
               

               
Cow position:
               
chrX:16065664-16065239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
181, 8
               

               
Conread position:
               
11-479
               

               
Cow position:
               
chrX:3427166-3427620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 188
               

               
Conread position:
               
11-759
               

               
Cow position:
               
chrX:20588725-20589438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 135
               

               
Conread position:
               
12-161
               

               
Cow position:
               
chrX:36071727-36071575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chrX:28867210-28866986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
12-276
               

               
Cow position:
               
chrX:504003-503739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chrX:24110536-24110255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
12-305
               

               
Cow position:
               
chrX:10419307-10418998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 144
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chrX:35938994-35938582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
12-425
               

               
Cow position:
               
chrX:20134116-20133701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
12-431
               

               
Cow position:
               
chrX:41886966-41886544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 112
               

               
Conread position:
               
12-444
               

               
Cow position:
               
chrX:23454022-23453580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
12-447
               

               
Cow position:
               
chrX:2145003-2145441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
12-760
               

               
Cow position:
               
chrX:11462963-11462222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 350
               

               
Conread position:
               
13-158
               

               
Cow position:
               
chrX:28752017-28751869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
13-258
               

               
Cow position:
               
chrX:27324499-27324247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chrX:24729023-24729313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chrX:23959010-23959339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
13-349
               

               
Cow position:
               
chrX:23317844-23317496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
19, 158
               

               
Conread position:
               
13-367
               

               
Cow position:
               
chrX:31200594-31200951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chrX:5366961-5366587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 59
               

               
Conread position:
               
13-393
               

               
Cow position:
               
chrX:38124430-38124827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
13-444
               

               
Cow position:
               
chrX:16406622-16407045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
13-447
               

               
Cow position:
               
chrX:9094679-9095121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 140
               

               
Conread position:
               
13-447
               

               
Cow position:
               
chrX:15123121-15122687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
13-447
               

               
Cow position:
               
chrX:16781319-16781760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 146
               

               
Conread position:
               
13-458
               

               
Cow position:
               
chrX:5247426-5247878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 138
               

               
Conread position:
               
13-478
               

               
Cow position:
               
chrX:27645105-27645564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chrX:23021347-23021825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 448
               

               
Conread position:
               
13-735
               

               
Cow position:
               
chrX:10754609-10755309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chrX:6236792-6236075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 138
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chrX:7552776-7552030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 446
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chrX:12358920-12359656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
13-760
               

               
Cow position:
               
chrX:18951682-18950961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 140
               

               
Conread position:
               
14-399
               

               
Cow position:
               
chrX:34835944-34835579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
108, 81
               

               
Conread position:
               
14-444
               

               
Cow position:
               
chrX:2480595-2480157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 195
               

               
Conread position:
               
14-479
               

               
Cow position:
               
chrX:20367139-20366661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
14-480
               

               
Cow position:
               
chrX:21657619-21658105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
16-444
               

               
Cow position:
               
chrX:14218076-14217652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 234
               

               
Conread position:
               
20-257
               

               
Cow position:
               
chrX:48856462-48856218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 38
               

               
Conread position:
               
20-401
               

               
Cow position:
               
chrX:16022804-16023194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
21-444
               

               
Cow position:
               
chrX:14461357-14461790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
23-504
               

               
Cow position:
               
chrX:2500691-2501182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
23-760
               

               
Cow position:
               
chrX:2486697-2487414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 295
               

               
Conread position:
               
24-232
               

               
Cow position:
               
chrX:25017082-25016869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
24-352
               

               
Cow position:
               
chrX:6248130-6247802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
165, 104
               

               
Conread position:
               
24-419
               

               
Cow position:
               
chrX:21831557-21831962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 396
               

               
Conread position:
               
24-709
               

               
Cow position:
               
chrX:8481497-8482169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 222
               

               
Conread position:
               
25-332
               

               
Cow position:
               
chrX:2381554-2381860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
25-332
               

               
Cow position:
               
chrX:40497243-40496950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
8, 96
               

               
Conread position:
               
25-362
               

               
Cow position:
               
chrX:11859894-11859558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 210
               

               
Conread position:
               
25-412
               

               
Cow position:
               
chrX:20799345-20799748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 273
               

               
Conread position:
               
25-423
               

               
Cow position:
               
chrX:21000250-21000664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
25-479
               

               
Cow position:
               
chrX:37945455-37945010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 51
               

               
Conread position:
               
25-479
               

               
Cow position:
               
chrX:37950493-37950936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
8, 51
               

               
Conread position:
               
25-674
               

               
Cow position:
               
chrX:29878448-29877844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
164, 70
               

               
Conread position:
               
25-746
               

               
Cow position:
               
chrX:387181-387891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 113
               

               
Conread position:
               
25-969
               

               
Cow position:
               
chrX:302143-303123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
997
               

               
Alignm identity:
               
651
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 113
               

               
Conread position:
               
26-196
               

               
Cow position:
               
chrX:3466596-3466423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-205
               

               
Cow position:
               
chrX:35022304-35022480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
26-214
               

               
Cow position:
               
chrX:9170326-9170138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
26-221
               

               
Cow position:
               
chrX:15622446-15622248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-225
               

               
Cow position:
               
chrX:14783430-14783230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 125
               

               
Conread position:
               
26-229
               

               
Cow position:
               
chrX:673156-672952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 126
               

               
Conread position:
               
26-229
               

               
Cow position:
               
chrX:28505216-28505010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-237
               

               
Cow position:
               
chrX:28559827-28559614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
26-267
               

               
Cow position:
               
chrX:13350522-13350280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
193, 90
               

               
Conread position:
               
26-276
               

               
Cow position:
               
chrX:17476362-17476103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-281
               

               
Cow position:
               
chrX:40642245-40642495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
26-293
               

               
Cow position:
               
chrX:6871036-6870760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
26-296
               

               
Cow position:
               
chrX:1941305-1941035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
163, 72
               

               
Conread position:
               
26-342
               

               
Cow position:
               
chrX:16809840-16809515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-364
               

               
Cow position:
               
chrX:24887257-24886920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
90, 262
               

               
Conread position:
               
26-364
               

               
Cow position:
               
chrX:45375988-45375640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
26-369
               

               
Cow position:
               
chrX:42382314-42381980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
100, 132
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chrX:16805095-16804741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-380
               

               
Cow position:
               
chrX:29792016-29791673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
160, 98
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chrX:16361059-16360698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 141
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chrX:20034358-20033997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 111
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chrX:1549027-1549392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chrX:5355774-5355409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
88, 338
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chrX:28625577-28625215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
26-389
               

               
Cow position:
               
chrX:18246182-18246527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
26-390
               

               
Cow position:
               
chrX:20651491-20651864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-393
               

               
Cow position:
               
chrX:3142882-3143256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
26-394
               

               
Cow position:
               
chrX:16068327-16067945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
91, 190
               

               
Conread position:
               
26-422
               

               
Cow position:
               
chrX:21268028-21267620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
26-424
               

               
Cow position:
               
chrX:23524090-23523706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
26-427
               

               
Cow position:
               
chrX:2273357-2273757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
26-434
               

               
Cow position:
               
chrX:16710010-16710431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chrX:12652444-12652028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 126
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chrX:20732300-20732712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chrX:35531906-35532322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-436
               

               
Cow position:
               
chrX:7095546-7095962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-443
               

               
Cow position:
               
chrX:36838763-36839194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 167
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:3083087-3082666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 52
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:15177385-15176965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:18221463-18221886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 283
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:24446164-24445736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:29098480-29098897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
163, 123
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:30168028-30167602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:30436951-30437379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:31979802-31979362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 139
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:34093783-34093355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 393
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chrX:37851190-37851617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-445
               

               
Cow position:
               
chrX:12344985-12345411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
26-446
               

               
Cow position:
               
chrX:17890592-17891016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:2047139-2047560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:11458757-11458336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 201
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:20725017-20725445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 392
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:21492212-21492644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:22126721-22126299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 130
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:23388501-23388073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:24730694-24731125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:26443599-26444022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 41
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:26623762-26623328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:27303996-27304417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 141
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:29891162-29891581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:29909378-29908942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 141
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:30137810-30137381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
26-447
               

               
Cow position:
               
chrX:31727529-31727951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 69
               

               
Conread position:
               
26-450
               

               
Cow position:
               
chrX:8961773-8961347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
26-450
               

               
Cow position:
               
chrX:22617137-22616698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
83, 379
               

               
Conread position:
               
26-458
               

               
Cow position:
               
chrX:12312935-12312513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
26-463
               

               
Cow position:
               
chrX:24412076-24412519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 125
               

               
Conread position:
               
26-479
               

               
Cow position:
               
chrX:731511-731052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 283
               

               
Conread position:
               
26-479
               

               
Cow position:
               
chrX:5281735-5281273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 288
               

               
Conread position:
               
26-479
               

               
Cow position:
               
chrX:17488567-17488128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 97
               

               
Conread position:
               
26-479
               

               
Cow position:
               
chrX:22565641-22565175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
26-480
               

               
Cow position:
               
chrX:8513341-8513805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 89
               

               
Conread position:
               
26-485
               

               
Cow position:
               
chrX:9127129-9127600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
26-575
               

               
Cow position:
               
chrX:3373874-3373324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
26-722
               

               
Cow position:
               
chrX:7119536-7120222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 410
               

               
Conread position:
               
26-757
               

               
Cow position:
               
chrX:13072401-13071677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 419
               

               
Conread position:
               
26-757
               

               
Cow position:
               
chrX:13092961-13092237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 419
               

               
Conread position:
               
26-757
               

               
Cow position:
               
chrX:26756596-26755871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 418
               

               
Conread position:
               
26-759
               

               
Cow position:
               
chrX:2270707-2271391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 67
               

               
Conread position:
               
26-759
               

               
Cow position:
               
chrX:3359875-3360592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 289
               

               
Conread position:
               
26-759
               

               
Cow position:
               
chrX:9010384-9011104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
26-759
               

               
Cow position:
               
chrX:19475107-19474378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 285
               

               
Conread position:
               
26-759
               

               
Cow position:
               
chrX:21766676-21767404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 432
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:2578470-2579192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 292
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:2814433-2813704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 433
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:3419173-3418446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:5321668-5320942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 74
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:5333384-5332660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:7753950-7754677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 432
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:10529735-10529013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:13407235-13406515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 185
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:15261565-15260844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:15978908-15978180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:17053606-17054342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:18657757-18657034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 292
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:19397821-19398549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 129
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:20357956-20357228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 441
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:22818122-22818845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 301
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:23279074-23279798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 126
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:24770806-24770085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 124
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:27424239-27423499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 446
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:28754293-28753565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:29095271-29094547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 432
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:30230063-30229340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:32065118-32064396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 183
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:36536682-36535958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 141
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:38149642-38150368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 169
               

               
Conread position:
               
26-760
               

               
Cow position:
               
chrX:39712599-39713322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
26-763
               

               
Cow position:
               
chrX:21225524-21226255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 432
               

               
Conread position:
               
26-763
               

               
Cow position:
               
chrX:21342458-21343170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
26-768
               

               
Cow position:
               
chrX:13929686-13928951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 292
               

               
Conread position:
               
26-775
               

               
Cow position:
               
chrX:4412913-4413663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
26-775
               

               
Cow position:
               
chrX:11147283-11146550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
26-775
               

               
Cow position:
               
chrX:23327771-23327018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 361
               

               
Conread position:
               
26-965
               

               
Cow position:
               
chrX:28587026-28587972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
976
               

               
Alignm identity:
               
646
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 431
               

               
Conread position:
               
26-1168
               

               
Cow position:
               
chrX:10867802-10866652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1191
               

               
Alignm identity:
               
741
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 161
               

               
Conread position:
               
26-1169
               

               
Cow position:
               
chrX:14596903-14598064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1197
               

               
Alignm identity:
               
765
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
26-1180
               

               
Cow position:
               
chrX:30013053-30014202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1164
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 56
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chrX:26398073-26397873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
27-358
               

               
Cow position:
               
chrX:342237-342573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
27-382
               

               
Cow position:
               
chrX:21751614-21751248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
27-434
               

               
Cow position:
               
chrX:16701728-16702146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
27-446
               

               
Cow position:
               
chrX:23073184-23073622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
27-447
               

               
Cow position:
               
chrX:23133653-23134073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 89
               

               
Conread position:
               
27-447
               

               
Cow position:
               
chrX:23394652-23395081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 303
               

               
Conread position:
               
27-463
               

               
Cow position:
               
chrX:22809942-22810387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 119
               

               
Conread position:
               
27-479
               

               
Cow position:
               
chrX:35384771-35384328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
27-480
               

               
Cow position:
               
chrX:20512512-20512056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 151
               

               
Conread position:
               
27-680
               

               
Cow position:
               
chrX:12464051-12464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 381
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chrX:32124331-32124525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 71
               

               
Conread position:
               
28-351
               

               
Cow position:
               
chrX:13087556-13087254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 137
               

               
Conread position:
               
28-760
               

               
Cow position:
               
chrX:27978768-27978060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 123
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chrX:30059232-30059496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
29-422
               

               
Cow position:
               
chrX:21388633-21389034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
29-422
               

               
Cow position:
               
chrX:21413648-21414047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
95, 329
               

               
Conread position:
               
29-760
               

               
Cow position:
               
chrX:16045025-16045743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 95
               

               
Conread position:
               
29-760
               

               
Cow position:
               
chrX:30181877-30181153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
31-426
               

               
Cow position:
               
chrX:13416377-13415973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
31-482
               

               
Cow position:
               
chrX:17611412-17610933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
32-221
               

               
Cow position:
               
chrX:31511658-31511856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chrX:6373605-6373872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 181
               

               
Conread position:
               
32-444
               

               
Cow position:
               
chrX:38590125-38589719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
32-447
               

               
Cow position:
               
chrX:6280747-6280321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 119
               

               
Conread position:
               
33-367
               

               
Cow position:
               
chrX:20185276-20185619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
33-479
               

               
Cow position:
               
chrX:24200061-24200509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
93, 107
               

               
Conread position:
               
34-438
               

               
Cow position:
               
chrX:27496940-27497340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
34-479
               

               
Cow position:
               
chrX:41686663-41687123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 214
               

               
Conread position:
               
34-671
               

               
Cow position:
               
chrX:18919708-18920321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 65
               

               
Conread position:
               
34-760
               

               
Cow position:
               
chrX:39696825-39697539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
34-776
               

               
Cow position:
               
chrX:21266340-21265593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
36-746
               

               
Cow position:
               
chrX:18899751-18899065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
38-365
               

               
Cow position:
               
chrX:24204095-24204414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
38-371
               

               
Cow position:
               
chrX:43073806-43074135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 82
               

               
Conread position:
               
39-380
               

               
Cow position:
               
chrX:26274025-26274367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 85
               

               
Conread position:
               
42-434
               

               
Cow position:
               
chrX:28556452-28556843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 109
               

               
Conread position:
               
43-409
               

               
Cow position:
               
chrX:26433461-26433831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
45-360
               

               
Cow position:
               
chrX:34195112-34194795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
45-438
               

               
Cow position:
               
chrX:4906928-4906527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 264
               

               
Conread position:
               
46-409
               

               
Cow position:
               
chrX:7174829-7175194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 105
               

               
Conread position:
               
46-454
               

               
Cow position:
               
chrX:2654285-2654696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
46-759
               

               
Cow position:
               
chrX:5865206-5865916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 154
               

               
Conread position:
               
62-447
               

               
Cow position:
               
chrX:42008717-42009105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
62-760
               

               
Cow position:
               
chrX:24469037-24468350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 90
               

               
Conread position:
               
62-760
               

               
Cow position:
               
chrX:29911418-29912112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 105
               

               
Conread position:
               
70-380
               

               
Cow position:
               
chrX:35936646-35936331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
71-369
               

               
Cow position:
               
chrX:22590752-22590442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
71-682
               

               
Cow position:
               
chrX:29759360-29758736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
71-760
               

               
Cow position:
               
chrX:27591925-27591249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
72-757
               

               
Cow position:
               
chrX:26443147-26442481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 154
               

               
Conread position:
               
72-768
               

               
Cow position:
               
chrX:3407239-3406559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
116, 8
               

               
Conread position:
               
75-419
               

               
Cow position:
               
chrX:23573708-23573359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
75-444
               

               
Cow position:
               
chrX:22076834-22076458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 262
               

               
Conread position:
               
75-444
               

               
Cow position:
               
chrX:24444969-24444598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
76-327
               

               
Cow position:
               
chrX:10993872-10994123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
76-444
               

               
Cow position:
               
chrX:27000116-27000453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
312, 39
               

               
Conread position:
               
78-383
               

               
Cow position:
               
chrX:21317565-21317879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
81-216
               

               
Cow position:
               
chrX:28667851-28667714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
87-292
               

               
Cow position:
               
chrX:11114020-11113815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
88-740
               

               
Cow position:
               
chrX:15569818-15569159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
89-480
               

               
Cow position:
               
chrX:23384441-23384041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
34, 121
               

               
Conread position:
               
97-402
               

               
Cow position:
               
chrX:26847796-26848104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
97-422
               

               
Cow position:
               
chrX:5640756-5640426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
98-479
               

               
Cow position:
               
chrX:7810838-7810448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
98-757
               

               
Cow position:
               
chrX:4766834-4767471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
99-760
               

               
Cow position:
               
chrX:29171660-29171009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
107-687
               

               
Cow position:
               
chrX:19876965-19877526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
111-348
               

               
Cow position:
               
chrX:21628247-21628006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
113-396
               

               
Cow position:
               
chrX:16855212-16854925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
113-444
               

               
Cow position:
               
chrX:36691316-36690983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
11, 239
               

               
Conread position:
               
113-760
               

               
Cow position:
               
chrX:2560812-2560176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 247
               

               
Conread position:
               
113-760
               

               
Cow position:
               
chrX:43437771-43437128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 352
               

               
Conread position:
               
115-423
               

               
Cow position:
               
chrX:41528666-41528361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 71
               

               
Conread position:
               
116-368
               

               
Cow position:
               
chrX:13432033-13431777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 168
               

               
Conread position:
               
116-480
               

               
Cow position:
               
chrX:24463287-24462925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
117-384
               

               
Cow position:
               
chrX:6987007-6986758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
112, 63
               

               
Conread position:
               
119-273
               

               
Cow position:
               
chrX:23340236-23340079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
119-435
               

               
Cow position:
               
chrX:23236040-23236354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
120-760
               

               
Cow position:
               
chrX:4327542-4326918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 150
               

               
Conread position:
               
121-479
               

               
Cow position:
               
chrX:11991744-11991382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 204
               

               
Conread position:
               
125-479
               

               
Cow position:
               
chrX:9067120-9067478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
92, 72
               

               
Conread position:
               
128-444
               

               
Cow position:
               
chrX:12667178-12666857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
128-482
               

               
Cow position:
               
chrX:30976670-30976322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
53, 173
               

               
Conread position:
               
128-760
               

               
Cow position:
               
chrX:12308612-12307991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
131-425
               

               
Cow position:
               
chrX:2879572-2879272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
58, 192
               

               
Conread position:
               
131-690
               

               
Cow position:
               
chrX:32413339-32412791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
133-480
               

               
Cow position:
               
chrX:23925882-23925538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
135-434
               

               
Cow position:
               
chrX:5393023-5392717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
58, 269
               

               
Conread position:
               
138-452
               

               
Cow position:
               
chrX:31340500-31340191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
138-680
               

               
Cow position:
               
chrX:13243816-13244345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 327
               

               
Conread position:
               
139-422
               

               
Cow position:
               
chrX:4742888-4742595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 210
               

               
Conread position:
               
141-380
               

               
Cow position:
               
chrX:3397468-3397232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
141-381
               

               
Cow position:
               
chrX:28648679-28648440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
143-419
               

               
Cow position:
               
chrX:30090852-30090577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
146-383
               

               
Cow position:
               
chrX:14717423-14717174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
171-760
               

               
Cow position:
               
chrX:30054278-30053697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 224
               

               
Conread position:
               
172-760
               

               
Cow position:
               
chrX:19607868-19608448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 293
               

               
Conread position:
               
176-463
               

               
Cow position:
               
chrX:15992523-15992803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
178-444
               

               
Cow position:
               
chrX:35887291-35887563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
179-405
               

               
Cow position:
               
chrX:29046645-29046877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 185
               

               
Conread position:
               
186-760
               

               
Cow position:
               
chrX:25450538-25451107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
203, 18
               

               
Conread position:
               
188-444
               

               
Cow position:
               
chrX:1787792-1788032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
189-760
               

               
Cow position:
               
chrX:3466148-3465590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
191-389
               

               
Cow position:
               
chrX:13461217-13461014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
191-445
               

               
Cow position:
               
chrX:36194114-36194374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 249
               

               
Conread position:
               
197-462
               

               
Cow position:
               
chrX:16859388-16859117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
215-425
               

               
Cow position:
               
chrX:24171338-24171133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
218-475
               

               
Cow position:
               
chrX:28667684-28667427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
220-477
               

               
Cow position:
               
chrX:29009727-29009978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 113
               

               
Conread position:
               
221-760
               

               
Cow position:
               
chrX:26274393-26274910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
168, 228
               

               
Conread position:
               
222-363
               

               
Cow position:
               
chrX:16231589-16231449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
222-389
               

               
Cow position:
               
chrX:25070287-25070119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
81, 74
               

               
Conread position:
               
222-389
               

               
Cow position:
               
chrX:29157288-29157451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
222-427
               

               
Cow position:
               
chrX:37135707-37135501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
222-435
               

               
Cow position:
               
chrX:24322579-24322366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
222-444
               

               
Cow position:
               
chrX:18192666-18192888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 41
               

               
Conread position:
               
222-444
               

               
Cow position:
               
chrX:30164980-30164757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
222-447
               

               
Cow position:
               
chrX:38963463-38963239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 98
               

               
Conread position:
               
222-479
               

               
Cow position:
               
chrX:6196783-6196522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
222-760
               

               
Cow position:
               
chrX:21581691-21582213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
167, 227
               

               
Conread position:
               
225-451
               

               
Cow position:
               
chrX:13264004-13264230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
174, 76
               

               
Conread position:
               
225-480
               

               
Cow position:
               
chrX:22331521-22331260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
227-478
               

               
Cow position:
               
chrX:18289817-18289575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
217, 51
               

               
Conread position:
               
227-760
               

               
Cow position:
               
chrX:14783091-14782574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
162, 51
               

               
Conread position:
               
229-384
               

               
Cow position:
               
chrX:34007261-34007106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
229-446
               

               
Cow position:
               
chrX:9403434-9403221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
159, 79
               

               
Conread position:
               
229-760
               

               
Cow position:
               
chrX:672732-672220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
160, 77
               

               
Conread position:
               
239-775
               

               
Cow position:
               
chrX:359786-360315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
241-725
               

               
Cow position:
               
chrX:16085897-16086357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
249-426
               

               
Cow position:
               
chrX:31051937-31051765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
253-479
               

               
Cow position:
               
chrX:16539757-16539975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
255-477
               

               
Cow position:
               
chrX:23335611-23335393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
191, 25
               

               
Conread position:
               
266-435
               

               
Cow position:
               
chrX:19621655-19621825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
64, 91
               

               
Conread position:
               
266-760
               

               
Cow position:
               
chrX:15622248-15621760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 156
               

               
Conread position:
               
286-746
               

               
Cow position:
               
chrX:2118077-2117632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
103, 172
               

               
Conread position:
               
286-760
               

               
Cow position:
               
chrX:26530269-26530744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
75, 165
               

               
Conread position:
               
315-760
               

               
Cow position:
               
chrX:12144440-12144870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
74, 92
               

               
Conread position:
               
324-760
               

               
Cow position:
               
chrX:5298890-5298469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
476-721
               

               
Cow position:
               
chrX:19396405-19396651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
495-685
               

               
Cow position:
               
chrX:24996107-24995913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
495-745
               

               
Cow position:
               
chrX:19920587-19920332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
495-746
               

               
Cow position:
               
chrX:164407-164664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
495-746
               

               
Cow position:
               
chrX:16407049-16407309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
495-760
               

               
Cow position:
               
chrX:5426586-5426862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 180
               

               
Conread position:
               
500-767
               

               
Cow position:
               
chrX:31524290-31524570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 208
               

               
Conread position:
               
501-740
               

               
Cow position:
               
chrX:4157567-4157322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 222
               

               
Conread position:
               
501-745
               

               
Cow position:
               
chrX:17488135-17487886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
25, 247
               

               
Conread position:
               
501-749
               

               
Cow position:
               
chrX:36908455-36908204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
526-744
               

               
Cow position:
               
chrX:39765093-39765316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 148
               

               
Conread position:
               
529-1139
               

               
Cow position:
               
chrX:23335213-23334558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
530-746
               

               
Cow position:
               
chrX:22963984-22963767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
531-945
               

               
Cow position:
               
chrX:13667414-13666989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 140
               

               
Conread position:
               
533-1224
               

               
Cow position:
               
chrX:25321692-25320980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 15
               

               
Conread position:
               
534-1222
               

               
Cow position:
               
chrX:28667411-28666681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chrX:22077799-22077569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chrX:36194637-36194867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
539-760
               

               
Cow position:
               
chrX:6657725-6657952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 134
               

               
Conread position:
               
542-760
               

               
Cow position:
               
chrX:4342299-4342523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
551-760
               

               
Cow position:
               
chrX:9086266-9086481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
551-760
               

               
Cow position:
               
chrX:17782061-17782272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
551-1170
               

               
Cow position:
               
chrX:13654056-13654709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
771-1224
               

               
Cow position:
               
chrX:17159313-17158839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
771-1224
               

               
Cow position:
               
chrX:29029887-29029419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
884-1173
               

               
Cow position:
               
chrX:24032056-24031768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
884-1218
               

               
Cow position:
               
chrX:4481902-4482230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
114, 55
               

               
Conread position:
               
884-1218
               

               
Cow position:
               
chrX:17610530-17610181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 231
               

               
Conread position:
               
884-1220
               

               
Cow position:
               
chrX:2299816-2300157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
884-1221
               

               
Cow position:
               
chrX:37753344-37753688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 168
               

               
Conread position:
               
884-1224
               

               
Cow position:
               
chrX:13266396-13266736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
887-1224
               

               
Cow position:
               
chrX:6495420-6495071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
887-1224
               

               
Cow position:
               
chrX:23974514-23974163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
57, 192
               

               
Conread position:
               
888-1224
               

               
Cow position:
               
chrX:23314878-23314533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 194
               

               
Conread position:
               
888-1224
               

               
Cow position:
               
chrX:31803814-31804167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 210
               

               
Conread position:
               
888-1224
               

               
Cow position:
               
chrX:37795528-37795195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
172, 68
               

               
Conread position:
               
889-1103
               

               
Cow position:
               
chrX:4429929-4430144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
90, 103
               

               
Conread position:
               
889-1168
               

               
Cow position:
               
chrX:9402803-9402527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
183, 156
               

               
Conread position:
               
893-1170
               

               
Cow position:
               
chrX:23352814-23353089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
21, 212
               

               
Conread position:
               
912-1168
               

               
Cow position:
               
chrX:1047531-1047790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
952-1168
               

               
Cow position:
               
chrX:6026696-6026481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
957-1224
               

               
Cow position:
               
chrX:25146568-25146842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
975-1222
               

               
Cow position:
               
chrX:388553-388787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1019-1224
               

               
Cow position:
               
chrX:23515411-23515186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 137
               
Show alignments to all cow chromosomes.