Cow genome map

Conread name: Ss1.1-rpliv0138_o7.5

Conread position: 24-506
Cow position: chrX:28615631-28616099 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 190

Conread position: 476-612
Cow position: chrX:28616310-28616449 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 117
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 582-810
Cow position: chrX:27261143-27261383 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 0

Conread position: 595-812
Cow position: chrX:29601862-29601635 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 79, 37

Conread position: 596-809
Cow position: chrX:30133351-30133129 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 84, 21

Conread position: 596-810
Cow position: chrX:18964856-18964633 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 150, 30

Conread position: 596-812
Cow position: chrX:21327876-21328108 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 6

Conread position: 599-811
Cow position: chrX:35885756-35885539 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 9

Conread position: 600-756
Cow position: chrX:20743575-20743735 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 26

Conread position: 600-810
Cow position: chrX:44339351-44339128 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 47

Conread position: 600-811
Cow position: chrX:32318276-32318494 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 16

Conread position: 600-812
Cow position: chrX:24365852-24365628 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 124

Conread position: 600-812
Cow position: chrX:34441478-34441259 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 49

Conread position: 600-812
Cow position: chrX:42893890-42894116 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 600-815
Cow position: chrX:41027129-41027357 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 17

Conread position: 601-812
Cow position: chrX:35268839-35269051 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 86, 25

Conread position: 606-789
Cow position: chrX:14599511-14599704 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 90

Conread position: 606-812
Cow position: chrX:6407523-6407738 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 63, 11

Conread position: 606-812
Cow position: chrX:38964085-38964291 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 69, 16

Conread position: 606-816
Cow position: chrX:40680590-40680813 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 69, 0

Conread position: 607-812
Cow position: chrX:161391-161597 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 73, 19

Conread position: 610-812
Cow position: chrX:42450033-42449819 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 65, 16

Conread position: 613-810
Cow position: chrX:31250371-31250581 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 618-812
Cow position: chrX:29478712-29478916 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 87

Conread position: 618-813
Cow position: chrX:4328194-4327988 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 62, 14

Conread position: 619-814
Cow position: chrX:16762760-16762964 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 625-811
Cow position: chrX:46793751-46793557 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 626-809
Cow position: chrX:29544881-29544691 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 626-811
Cow position: chrX:26843274-26843073 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 626-812
Cow position: chrX:3806678-3806872 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 626-812
Cow position: chrX:4269069-4268876 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 626-812
Cow position: chrX:13121934-13122138 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 24

Conread position: 626-812
Cow position: chrX:20887643-20887451 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 48

Conread position: 626-812
Cow position: chrX:25035386-25035187 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 626-812
Cow position: chrX:31294576-31294375 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 626-813
Cow position: chrX:42836178-42836376 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 10

Conread position: 626-814
Cow position: chrX:4632864-4632658 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 627-785
Cow position: chrX:16830221-16830380 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 48

Conread position: 627-799
Cow position: chrX:24331774-24331958 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 12

Conread position: 627-810
Cow position: chrX:25207857-25207669 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 12

Conread position: 627-811
Cow position: chrX:23188783-23188596 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 23

Conread position: 627-812
Cow position: chrX:12095777-12095577 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 627-812
Cow position: chrX:20339894-20339699 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 23

Conread position: 627-812
Cow position: chrX:23335975-23335781 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 47, 67

Conread position: 627-813
Cow position: chrX:4109186-4109380 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 31

Conread position: 627-814
Cow position: chrX:12309389-12309189 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 627-815
Cow position: chrX:26205451-26205257 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 627-816
Cow position: chrX:35275983-35276184 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 33, 48

Conread position: 628-800
Cow position: chrX:16575110-16575295 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 628-808
Cow position: chrX:7648412-7648223 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 628-810
Cow position: chrX:41941621-41941815 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 22

Conread position: 628-812
Cow position: chrX:4279120-4278923 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 628-812
Cow position: chrX:4645915-4645720 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 628-812
Cow position: chrX:5063249-5063432 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 123, 57

Conread position: 628-812
Cow position: chrX:21672552-21672756 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 628-812
Cow position: chrX:40336909-40337105 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 0

Conread position: 628-812
Cow position: chrX:42247184-42246987 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 628-814
Cow position: chrX:20678140-20677951 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 47

Conread position: 628-816
Cow position: chrX:32910102-32910295 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 95

Conread position: 629-812
Cow position: chrX:33654845-33654649 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 629-812
Cow position: chrX:34420733-34420930 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 185

Conread position: 629-812
Cow position: chrX:36866172-36866367 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 106

Conread position: 630-812
Cow position: chrX:31729442-31729631 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 630-812
Cow position: chrX:34543784-34543980 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 630-812
Cow position: chrX:40283125-40283317 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 47, 63

Conread position: 631-812
Cow position: chrX:36283339-36283534 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 631-812
Cow position: chrX:37955848-37956042 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 149

Conread position: 633-812
Cow position: chrX:39180230-39180039 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 100

Conread position: 637-812
Cow position: chrX:35392287-35392109 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 57

Conread position: 639-810
Cow position: chrX:27705596-27705778 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 19, 11

Conread position: 639-812
Cow position: chrX:1122534-1122352 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 41, 62

Conread position: 639-812
Cow position: chrX:35285182-35285368 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 639-812
Cow position: chrX:44054811-44054997 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 640-808
Cow position: chrX:27175013-27175189 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 46

Conread position: 645-812
Cow position: chrX:19356483-19356658 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 55

Conread position: 648-812
Cow position: chrX:34398766-34398589 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 650-812
Cow position: chrX:19717541-19717708 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 654-812
Cow position: chrX:1101585-1101744 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 656-812
Cow position: chrX:38094490-38094330 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 662-808
Cow position: chrX:37749951-37749799 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 662-812
Cow position: chrX:51864-51708 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 18, 31

Conread position: 662-812
Cow position: chrX:3860598-3860453 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 101, 88

Conread position: 662-812
Cow position: chrX:4091956-4092119 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 662-812
Cow position: chrX:46909847-46910004 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 662-812
Cow position: chrX:47379089-47378936 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 93

Conread position: 664-814
Cow position: chrX:28850763-28850914 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 24

Conread position: 667-812
Cow position: chrX:8642086-8642239 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 6

Conread position: 673-812
Cow position: chrX:11813121-11813268 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.