Cow genome map
Conread name: | Ss1.1-rpliv0138_o7.5 |
Conread position: | 24-506 |
Cow position: | chrX:28615631-28616099 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 190 |
Conread position: | 476-612 |
Cow position: | chrX:28616310-28616449 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 117 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 582-810 |
Cow position: | chrX:27261143-27261383 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 170 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 96, 0 |
Conread position: | 595-812 |
Cow position: | chrX:29601862-29601635 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 158 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 79, 37 |
Conread position: | 596-809 |
Cow position: | chrX:30133351-30133129 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 156 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 84, 21 |
Conread position: | 596-810 |
Cow position: | chrX:18964856-18964633 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 157 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 150, 30 |
Conread position: | 596-812 |
Cow position: | chrX:21327876-21328108 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 167 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 30, 6 |
Conread position: | 599-811 |
Cow position: | chrX:35885756-35885539 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 153 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 60, 9 |
Conread position: | 600-756 |
Cow position: | chrX:20743575-20743735 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 118 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 76, 26 |
Conread position: | 600-810 |
Cow position: | chrX:44339351-44339128 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 158 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 54, 47 |
Conread position: | 600-811 |
Cow position: | chrX:32318276-32318494 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 154 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 73, 16 |
Conread position: | 600-812 |
Cow position: | chrX:24365852-24365628 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 161 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 32, 124 |
Conread position: | 600-812 |
Cow position: | chrX:34441478-34441259 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 158 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 91, 49 |
Conread position: | 600-812 |
Cow position: | chrX:42893890-42894116 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 156 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 600-815 |
Cow position: | chrX:41027129-41027357 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 164 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 35, 17 |
Conread position: | 601-812 |
Cow position: | chrX:35268839-35269051 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 156 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 86, 25 |
Conread position: | 606-789 |
Cow position: | chrX:14599511-14599704 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 141 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 24, 90 |
Conread position: | 606-812 |
Cow position: | chrX:6407523-6407738 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 157 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 63, 11 |
Conread position: | 606-812 |
Cow position: | chrX:38964085-38964291 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 149 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 69, 16 |
Conread position: | 606-816 |
Cow position: | chrX:40680590-40680813 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 167 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 607-812 |
Cow position: | chrX:161391-161597 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 151 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 73, 19 |
Conread position: | 610-812 |
Cow position: | chrX:42450033-42449819 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 157 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 65, 16 |
Conread position: | 613-810 |
Cow position: | chrX:31250371-31250581 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 155 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 67, 0 |
Conread position: | 618-812 |
Cow position: | chrX:29478712-29478916 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 146 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 62, 87 |
Conread position: | 618-813 |
Cow position: | chrX:4328194-4327988 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 152 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 62, 14 |
Conread position: | 619-814 |
Cow position: | chrX:16762760-16762964 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 147 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 625-811 |
Cow position: | chrX:46793751-46793557 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 137 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 626-809 |
Cow position: | chrX:29544881-29544691 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 136 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 626-811 |
Cow position: | chrX:26843274-26843073 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 147 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 626-812 |
Cow position: | chrX:3806678-3806872 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 139 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 626-812 |
Cow position: | chrX:4269069-4268876 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 136 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 626-812 |
Cow position: | chrX:13121934-13122138 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 153 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 32, 24 |
Conread position: | 626-812 |
Cow position: | chrX:20887643-20887451 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 138 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 43, 48 |
Conread position: | 626-812 |
Cow position: | chrX:25035386-25035187 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 142 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 626-812 |
Cow position: | chrX:31294576-31294375 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 144 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 626-813 |
Cow position: | chrX:42836178-42836376 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 149 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 54, 10 |
Conread position: | 626-814 |
Cow position: | chrX:4632864-4632658 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 154 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 627-785 |
Cow position: | chrX:16830221-16830380 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 117 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 63, 48 |
Conread position: | 627-799 |
Cow position: | chrX:24331774-24331958 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 135 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 53, 12 |
Conread position: | 627-810 |
Cow position: | chrX:25207857-25207669 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 141 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 52, 12 |
Conread position: | 627-811 |
Cow position: | chrX:23188783-23188596 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 132 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 31, 23 |
Conread position: | 627-812 |
Cow position: | chrX:12095777-12095577 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 146 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 627-812 |
Cow position: | chrX:20339894-20339699 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 152 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 53, 23 |
Conread position: | 627-812 |
Cow position: | chrX:23335975-23335781 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 144 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 47, 67 |
Conread position: | 627-813 |
Cow position: | chrX:4109186-4109380 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 145 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 63, 31 |
Conread position: | 627-814 |
Cow position: | chrX:12309389-12309189 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 148 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 627-815 |
Cow position: | chrX:26205451-26205257 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 142 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 627-816 |
Cow position: | chrX:35275983-35276184 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 155 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 33, 48 |
Conread position: | 628-800 |
Cow position: | chrX:16575110-16575295 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 136 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 628-808 |
Cow position: | chrX:7648412-7648223 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 137 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 628-810 |
Cow position: | chrX:41941621-41941815 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 146 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 31, 22 |
Conread position: | 628-812 |
Cow position: | chrX:4279120-4278923 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 145 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 628-812 |
Cow position: | chrX:4645915-4645720 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 141 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 628-812 |
Cow position: | chrX:5063249-5063432 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 142 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 123, 57 |
Conread position: | 628-812 |
Cow position: | chrX:21672552-21672756 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 149 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 628-812 |
Cow position: | chrX:40336909-40337105 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 151 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 628-812 |
Cow position: | chrX:42247184-42246987 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 147 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 628-814 |
Cow position: | chrX:20678140-20677951 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 133 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 69, 47 |
Conread position: | 628-816 |
Cow position: | chrX:32910102-32910295 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 144 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 52, 95 |
Conread position: | 629-812 |
Cow position: | chrX:33654845-33654649 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 144 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 629-812 |
Cow position: | chrX:34420733-34420930 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 145 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 51, 185 |
Conread position: | 629-812 |
Cow position: | chrX:36866172-36866367 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 146 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 51, 106 |
Conread position: | 630-812 |
Cow position: | chrX:31729442-31729631 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 141 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 630-812 |
Cow position: | chrX:34543784-34543980 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 140 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 630-812 |
Cow position: | chrX:40283125-40283317 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 144 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 47, 63 |
Conread position: | 631-812 |
Cow position: | chrX:36283339-36283534 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 146 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 631-812 |
Cow position: | chrX:37955848-37956042 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 145 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 47, 149 |
Conread position: | 633-812 |
Cow position: | chrX:39180230-39180039 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 141 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 47, 100 |
Conread position: | 637-812 |
Cow position: | chrX:35392287-35392109 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 134 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 43, 57 |
Conread position: | 639-810 |
Cow position: | chrX:27705596-27705778 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 142 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 19, 11 |
Conread position: | 639-812 |
Cow position: | chrX:1122534-1122352 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 139 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 41, 62 |
Conread position: | 639-812 |
Cow position: | chrX:35285182-35285368 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 140 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 639-812 |
Cow position: | chrX:44054811-44054997 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 136 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 640-808 |
Cow position: | chrX:27175013-27175189 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 128 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 38, 46 |
Conread position: | 645-812 |
Cow position: | chrX:19356483-19356658 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 127 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 13, 55 |
Conread position: | 648-812 |
Cow position: | chrX:34398766-34398589 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 134 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 650-812 |
Cow position: | chrX:19717541-19717708 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 120 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 654-812 |
Cow position: | chrX:1101585-1101744 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 116 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 656-812 |
Cow position: | chrX:38094490-38094330 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 117 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 662-808 |
Cow position: | chrX:37749951-37749799 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 662-812 |
Cow position: | chrX:51864-51708 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 123 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 18, 31 |
Conread position: | 662-812 |
Cow position: | chrX:3860598-3860453 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 115 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 101, 88 |
Conread position: | 662-812 |
Cow position: | chrX:4091956-4092119 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 127 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 662-812 |
Cow position: | chrX:46909847-46910004 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 119 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 662-812 |
Cow position: | chrX:47379089-47378936 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 119 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 14, 93 |
Conread position: | 664-814 |
Cow position: | chrX:28850763-28850914 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 117 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 96, 24 |
Conread position: | 667-812 |
Cow position: | chrX:8642086-8642239 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 122 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 31, 6 |
Conread position: | 673-812 |
Cow position: | chrX:11813121-11813268 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 112 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.