Cow genome map


           Conread name:
           Ss1.1-rplun0112_o20.5
        

               Conread position:
               187-601
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 60
               

               Conread position:
               187-601
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 74
               

               Conread position:
               188-707
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 123
               

               Conread position:
               195-601
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 12
               

               Conread position:
               203-526
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 108
               

               Conread position:
               203-573
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 106
               

               Conread position:
               205-754
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 106
               

               Conread position:
               209-493
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               11, 18
               

               Conread position:
               211-752
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               231-688
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 68
               

               Conread position:
               232-366
               

               Cow position:
               
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               232-410
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               147, 66
               

               Conread position:
               232-411
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               146, 49
               

               Conread position:
               232-412
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               232-482
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               232-561
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 30
               

               Conread position:
               232-580
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 69
               

               Conread position:
               232-628
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 13
               

               Conread position:
               234-379
               

               Cow position:
               
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               241-474
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               138, 60
               

               Conread position:
               241-479
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               132, 58
               

               Conread position:
               241-561
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 58
               

               Conread position:
               251-754
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 48
               

               Conread position:
               263-469
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               130, 36
               

               Conread position:
               263-755
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 36
               

               Conread position:
               266-471
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               104, 33
               

               Conread position:
               267-755
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 32
               

               Conread position:
               270-601
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 29
               

               Conread position:
               270-607
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 29
               

               Conread position:
               272-391
               

               Cow position:
               
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               273-601
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 26
               

               Conread position:
               273-601
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 26
               

               Conread position:
               275-409
               

               Cow position:
               
               

               Alignm length:
               139
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               106, 24
               

               Conread position:
               275-755
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 24
               

               Conread position:
               280-755
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 19
               

               Conread position:
               289-601
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               235
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               81, 12
               

               Conread position:
               299-581
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 244
               

               Conread position:
               299-752
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 22
               

               Conread position:
               313-581
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               321-610
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               12, 153
               

               Conread position:
               321-658
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               12, 30
               

               Conread position:
               325-628
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               41, 95
               

               Conread position:
               333-728
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 7
               

               Conread position:
               336-604
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 217
               

               Conread position:
               363-696
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 52
               

               Conread position:
               370-609
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               370-755
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               379-620
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 36
               

               Conread position:
               426-756
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 83
               

               Conread position:
               434-710
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 14
               

               Conread position:
               437-755
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 44
               

               Conread position:
               449-664
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               157, 59
               

               Conread position:
               459-755
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               213
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               122, 255
               

               Conread position:
               459-755
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               472-755
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               30, 23
               

               Conread position:
               472-756
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               46, 36
               

               Conread position:
               476-754
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               110, 93
               

               Conread position:
               517-755
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               87, 49
               

               Conread position:
               519-707
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               87, 102
               

               Conread position:
               570-738
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               612-756
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               16, 0
               
Show alignments to all cow chromosomes.