Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 187-601 |
| Cow position: | chr1:33391323-33390910 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 187-601 |
| Cow position: | chr1:72172865-72172453 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 188-707 |
| Cow position: | chr1:14026323-14025789 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 195-601 |
| Cow position: | chr1:90971250-90970845 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 203-526 |
| Cow position: | chr1:6319114-6319451 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 203-573 |
| Cow position: | chr1:35000031-35000392 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 205-754 |
| Cow position: | chr1:2758784-2758226 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 209-493 |
| Cow position: | chr1:70661904-70662190 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 211-752 |
| Cow position: | chr1:7452874-7452344 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 231-688 |
| Cow position: | chr1:87115274-87114812 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 68 |
| Conread position: | 232-366 |
| Cow position: | chr1:59241627-59241498 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 232-410 |
| Cow position: | chr1:3327363-3327541 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 232-411 |
| Cow position: | chr1:102411632-102411455 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 146, 49 |
| Conread position: | 232-412 |
| Cow position: | chr1:81648119-81648303 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 232-482 |
| Cow position: | chr1:27940297-27940055 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 232-561 |
| Cow position: | chr1:20203244-20203560 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 30 |
| Conread position: | 232-580 |
| Cow position: | chr1:78562332-78561977 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 232-628 |
| Cow position: | chr1:29888513-29888903 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 13 |
| Conread position: | 234-379 |
| Cow position: | chr1:92019650-92019793 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 241-474 |
| Cow position: | chr1:1923347-1923582 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 138, 60 |
| Conread position: | 241-479 |
| Cow position: | chr1:98410256-98410014 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 132, 58 |
| Conread position: | 241-561 |
| Cow position: | chr1:58142776-58143099 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 251-754 |
| Cow position: | chr1:67603676-67604170 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 48 |
| Conread position: | 263-469 |
| Cow position: | chr1:92388012-92388218 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 263-755 |
| Cow position: | chr1:95305090-95305579 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 266-471 |
| Cow position: | chr1:80160766-80160981 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 267-755 |
| Cow position: | chr1:35429965-35429498 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 270-601 |
| Cow position: | chr1:25518363-25518025 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 270-607 |
| Cow position: | chr1:61607681-61607338 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 272-391 |
| Cow position: | chr1:50764344-50764227 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 273-601 |
| Cow position: | chr1:58146120-58146451 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 273-601 |
| Cow position: | chr1:94534588-94534923 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 275-409 |
| Cow position: | chr1:83642862-83642998 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 24 |
| Conread position: | 275-755 |
| Cow position: | chr1:80172758-80172275 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 24 |
| Conread position: | 280-755 |
| Cow position: | chr1:101623373-101622901 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 289-601 |
| Cow position: | chr1:11375563-11375872 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 299-581 |
| Cow position: | chr1:97472783-97473069 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 244 |
| Conread position: | 299-752 |
| Cow position: | chr1:49051363-49051828 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 313-581 |
| Cow position: | chr1:56483911-56483653 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 321-610 |
| Cow position: | chr1:3330879-3330584 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 321-658 |
| Cow position: | chr1:92072346-92072669 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 325-628 |
| Cow position: | chr1:36074930-36075245 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 95 |
| Conread position: | 333-728 |
| Cow position: | chr1:71242242-71242630 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 336-604 |
| Cow position: | chr1:30069548-30069270 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 217 |
| Conread position: | 363-696 |
| Cow position: | chr1:13695385-13695051 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 370-609 |
| Cow position: | chr1:98426120-98425884 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 370-755 |
| Cow position: | chr1:68929406-68929026 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 43 |
| Conread position: | 379-620 |
| Cow position: | chr1:83643026-83643268 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 36 |
| Conread position: | 426-756 |
| Cow position: | chr1:90041705-90042037 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 434-710 |
| Cow position: | chr1:3327634-3327911 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 437-755 |
| Cow position: | chr1:102411118-102410800 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 44 |
| Conread position: | 449-664 |
| Cow position: | chr1:81534019-81533810 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 157, 59 |
| Conread position: | 459-755 |
| Cow position: | chr1:1923803-1924102 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 255 |
| Conread position: | 459-755 |
| Cow position: | chr1:80196412-80196136 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 472-755 |
| Cow position: | chr1:27939849-27939566 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 472-756 |
| Cow position: | chr1:98409541-98409256 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 476-754 |
| Cow position: | chr1:26910987-26910709 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 517-755 |
| Cow position: | chr1:80313829-80314066 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 49 |
| Conread position: | 519-707 |
| Cow position: | chr1:16538331-16538519 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 102 |
| Conread position: | 570-738 |
| Cow position: | chr1:81648812-81648978 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 612-756 |
| Cow position: | chr1:98425671-98425528 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.