Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 187-528 |
| Cow position: | chr10:22576777-22577134 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 124 |
| Conread position: | 187-557 |
| Cow position: | chr10:61650061-61649693 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 192-601 |
| Cow position: | chr10:33815738-33816146 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 199-379 |
| Cow position: | chr10:30082670-30082487 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 204-453 |
| Cow position: | chr10:13337190-13337434 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 205-379 |
| Cow position: | chr10:30086126-30085942 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 229-424 |
| Cow position: | chr10:68256621-68256424 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 229-642 |
| Cow position: | chr10:4676508-4676089 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 232-357 |
| Cow position: | chr10:16749858-16749981 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 232-411 |
| Cow position: | chr10:25949626-25949447 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 232-447 |
| Cow position: | chr10:14387231-14387436 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 232-603 |
| Cow position: | chr10:412587-412222 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 232-755 |
| Cow position: | chr10:4399557-4400068 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 15 |
| Conread position: | 232-755 |
| Cow position: | chr10:69887368-69887884 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 63 |
| Conread position: | 233-391 |
| Cow position: | chr10:62888546-62888394 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 236-375 |
| Cow position: | chr10:40599088-40598954 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 241-707 |
| Cow position: | chr10:33136216-33135742 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 250-454 |
| Cow position: | chr10:62445949-62445747 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 250-605 |
| Cow position: | chr10:12215753-12215404 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 49 |
| Conread position: | 250-686 |
| Cow position: | chr10:31165669-31165231 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 250-745 |
| Cow position: | chr10:55965065-55964572 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 267-626 |
| Cow position: | chr10:33795395-33795036 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 32 |
| Conread position: | 269-451 |
| Cow position: | chr10:59342782-59342599 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 270-506 |
| Cow position: | chr10:6953349-6953105 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 290-589 |
| Cow position: | chr10:32892894-32892606 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 298-569 |
| Cow position: | chr10:6159086-6158816 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 299-755 |
| Cow position: | chr10:38792333-38791876 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 321-708 |
| Cow position: | chr10:14424187-14423807 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 321-751 |
| Cow position: | chr10:25925060-25925496 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 321-752 |
| Cow position: | chr10:30084870-30084427 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 322-610 |
| Cow position: | chr10:32096917-32096623 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 322-695 |
| Cow position: | chr10:24720357-24719970 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 260 |
| Conread position: | 335-604 |
| Cow position: | chr10:53797708-53797986 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 345-605 |
| Cow position: | chr10:21043406-21043663 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 351-698 |
| Cow position: | chr10:36818110-36817758 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 370-755 |
| Cow position: | chr10:10076098-10076480 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 378-698 |
| Cow position: | chr10:67295619-67295950 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 379-695 |
| Cow position: | chr10:68256375-68256056 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 28 |
| Conread position: | 382-755 |
| Cow position: | chr10:1339206-1338831 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 387-570 |
| Cow position: | chr10:32884043-32884226 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 158 |
| Conread position: | 399-755 |
| Cow position: | chr10:40598882-40598528 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 119 |
| Conread position: | 418-707 |
| Cow position: | chr10:32307100-32306812 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 419-754 |
| Cow position: | chr10:22588103-22587768 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 173 |
| Conread position: | 419-755 |
| Cow position: | chr10:34982420-34982731 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 420-756 |
| Cow position: | chr10:16753359-16753704 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 175 |
| Conread position: | 421-687 |
| Cow position: | chr10:62888314-62888069 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 441-601 |
| Cow position: | chr10:50347362-50347521 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 444-698 |
| Cow position: | chr10:61535630-61535877 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 160, 42 |
| Conread position: | 447-693 |
| Cow position: | chr10:25934181-25933944 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 449-738 |
| Cow position: | chr10:13337481-13337770 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 111 |
| Conread position: | 450-754 |
| Cow position: | chr10:51684745-51684436 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 194 |
| Conread position: | 467-591 |
| Cow position: | chr10:30085875-30085750 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 472-755 |
| Cow position: | chr10:47482066-47481787 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 489-755 |
| Cow position: | chr10:59341659-59341396 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 111, 128 |
| Conread position: | 506-702 |
| Cow position: | chr10:14389753-14389938 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 557-755 |
| Cow position: | chr10:6157694-6157497 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 156 |
| Conread position: | 612-755 |
| Cow position: | chr10:411874-411731 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 624-756 |
| Cow position: | chr10:15364166-15364034 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.