Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-538 |
| Cow position: | chr11:72387968-72387611 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 178-394 |
| Cow position: | chr11:19684401-19684632 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 6, 134 |
| Conread position: | 187-482 |
| Cow position: | chr11:26568040-26567744 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 187-601 |
| Cow position: | chr11:61183384-61182964 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 195-605 |
| Cow position: | chr11:21794071-21793668 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 205-470 |
| Cow position: | chr11:31606278-31606555 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 205-605 |
| Cow position: | chr11:13055943-13056330 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 205-605 |
| Cow position: | chr11:78471524-78471941 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 206-388 |
| Cow position: | chr11:35072178-35071998 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 171, 65 |
| Conread position: | 214-627 |
| Cow position: | chr11:81719124-81719534 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 17 |
| Conread position: | 216-376 |
| Cow position: | chr11:16294609-16294764 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 220-412 |
| Cow position: | chr11:37332057-37331872 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 155, 8 |
| Conread position: | 229-375 |
| Cow position: | chr11:69429518-69429662 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 229-751 |
| Cow position: | chr11:12337166-12336646 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 229-755 |
| Cow position: | chr11:62186624-62187125 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 31 |
| Conread position: | 231-379 |
| Cow position: | chr11:4659862-4660006 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 232-389 |
| Cow position: | chr11:2536296-2536453 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 40 |
| Conread position: | 232-464 |
| Cow position: | chr11:63672124-63672354 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 145, 43 |
| Conread position: | 232-605 |
| Cow position: | chr11:47693581-47693207 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 67 |
| Conread position: | 232-753 |
| Cow position: | chr11:8100232-8100738 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 67 |
| Conread position: | 233-446 |
| Cow position: | chr11:41534468-41534683 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 241-755 |
| Cow position: | chr11:4158883-4158379 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 249-473 |
| Cow position: | chr11:35366913-35367124 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 250-753 |
| Cow position: | chr11:10134959-10135450 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 49 |
| Conread position: | 263-447 |
| Cow position: | chr11:24964606-24964422 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 266-755 |
| Cow position: | chr11:21797708-21797215 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 266-755 |
| Cow position: | chr11:63668341-63668823 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 267-601 |
| Cow position: | chr11:34680122-34679811 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 5 |
| Conread position: | 270-601 |
| Cow position: | chr11:65720381-65720045 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 272-504 |
| Cow position: | chr11:77736401-77736167 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 273-502 |
| Cow position: | chr11:25845206-25845442 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 275-411 |
| Cow position: | chr11:34414192-34414330 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 286-580 |
| Cow position: | chr11:19665644-19665346 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 289-526 |
| Cow position: | chr11:78209670-78209900 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 300-603 |
| Cow position: | chr11:40496857-40496554 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 300-753 |
| Cow position: | chr11:12369736-12369297 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 313-755 |
| Cow position: | chr11:37710322-37709876 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 321-751 |
| Cow position: | chr11:30129776-30130211 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 321-752 |
| Cow position: | chr11:49608093-49608501 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 337-744 |
| Cow position: | chr11:2609899-2610286 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 345-515 |
| Cow position: | chr11:75311627-75311456 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 353-605 |
| Cow position: | chr11:1045070-1045323 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 61 |
| Conread position: | 370-747 |
| Cow position: | chr11:37331855-37331504 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 376-755 |
| Cow position: | chr11:4660539-4660921 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 380-756 |
| Cow position: | chr11:35101724-35102103 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 388-752 |
| Cow position: | chr11:82532006-82532373 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 27 |
| Conread position: | 397-745 |
| Cow position: | chr11:45900062-45900412 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 416-702 |
| Cow position: | chr11:41534895-41535185 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 140 |
| Conread position: | 419-755 |
| Cow position: | chr11:19684703-19685037 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 30 |
| Conread position: | 422-754 |
| Cow position: | chr11:37329413-37329746 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 429-755 |
| Cow position: | chr11:66492001-66492322 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 123 |
| Conread position: | 431-661 |
| Cow position: | chr11:2536543-2536775 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 75 |
| Conread position: | 431-744 |
| Cow position: | chr11:62649244-62648932 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 270 |
| Conread position: | 432-604 |
| Cow position: | chr11:23051283-23051454 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 433-707 |
| Cow position: | chr11:38109104-38109374 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 438-581 |
| Cow position: | chr11:24964192-24964051 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 440-722 |
| Cow position: | chr11:35943068-35942790 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 167 |
| Conread position: | 441-752 |
| Cow position: | chr11:63674832-63675143 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 452-684 |
| Cow position: | chr11:41700499-41700267 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 138, 23 |
| Conread position: | 454-752 |
| Cow position: | chr11:9348960-9348656 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 459-605 |
| Cow position: | chr11:16295731-16295876 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 459-750 |
| Cow position: | chr11:31608881-31609151 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 463-756 |
| Cow position: | chr11:36261212-36260916 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 55 |
| Conread position: | 472-755 |
| Cow position: | chr11:35367339-35367619 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 571-708 |
| Cow position: | chr11:64366129-64366266 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.