Cow genome map

Conread name: Ss1.1-rplun0112_o20.5

Conread position: 177-538
Cow position:
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 71

Conread position: 178-394
Cow position:
Alignm length: 234
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 6, 134

Conread position: 187-482
Cow position:
Alignm length: 307
Alignm identity: 215
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 60

Conread position: 187-601
Cow position:
Alignm length: 435
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 73

Conread position: 195-605
Cow position:
Alignm length: 425
Alignm identity: 295
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 65

Conread position: 205-470
Cow position:
Alignm length: 281
Alignm identity: 202
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 42, 105

Conread position: 205-605
Cow position:
Alignm length: 409
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 55

Conread position: 205-605
Cow position:
Alignm length: 422
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 106

Conread position: 206-388
Cow position:
Alignm length: 185
Alignm identity: 138
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 171, 65

Conread position: 214-627
Cow position:
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 17

Conread position: 216-376
Cow position:
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 84

Conread position: 220-412
Cow position:
Alignm length: 197
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 155, 8

Conread position: 229-375
Cow position:
Alignm length: 147
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 229-751
Cow position:
Alignm length: 531
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 70

Conread position: 229-755
Cow position:
Alignm length: 532
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 31

Conread position: 231-379
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 232-389
Cow position:
Alignm length: 162
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 145, 40

Conread position: 232-464
Cow position:
Alignm length: 235
Alignm identity: 167
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 145, 43

Conread position: 232-605
Cow position:
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 67

Conread position: 232-753
Cow position:
Alignm length: 526
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 67

Conread position: 233-446
Cow position:
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 150, 8

Conread position: 241-755
Cow position:
Alignm length: 520
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 58

Conread position: 249-473
Cow position:
Alignm length: 226
Alignm identity: 167
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 61, 52

Conread position: 250-753
Cow position:
Alignm length: 516
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 49

Conread position: 263-447
Cow position:
Alignm length: 189
Alignm identity: 146
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 114, 24

Conread position: 266-755
Cow position:
Alignm length: 501
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 14

Conread position: 266-755
Cow position:
Alignm length: 497
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 33

Conread position: 267-601
Cow position:
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 5

Conread position: 270-601
Cow position:
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 29

Conread position: 272-504
Cow position:
Alignm length: 239
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 102, 27

Conread position: 273-502
Cow position:
Alignm length: 239
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 101, 26

Conread position: 275-411
Cow position:
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 102, 26

Conread position: 286-580
Cow position:
Alignm length: 304
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 13

Conread position: 289-526
Cow position:
Alignm length: 243
Alignm identity: 177
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 127, 10

Conread position: 300-603
Cow position:
Alignm length: 309
Alignm identity: 206
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 33, 17

Conread position: 300-753
Cow position:
Alignm length: 462
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 7

Conread position: 313-755
Cow position:
Alignm length: 454
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 6

Conread position: 321-751
Cow position:
Alignm length: 442
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 13

Conread position: 321-752
Cow position:
Alignm length: 439
Alignm identity: 298
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 40

Conread position: 337-744
Cow position:
Alignm length: 413
Alignm identity: 286
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 20, 74

Conread position: 345-515
Cow position:
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 70

Conread position: 353-605
Cow position:
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 61

Conread position: 370-747
Cow position:
Alignm length: 378
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 376-755
Cow position:
Alignm length: 390
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 38

Conread position: 380-756
Cow position:
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 35

Conread position: 388-752
Cow position:
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 27

Conread position: 397-745
Cow position:
Alignm length: 358
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 11, 30

Conread position: 416-702
Cow position:
Alignm length: 292
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 140

Conread position: 419-755
Cow position:
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 30

Conread position: 422-754
Cow position:
Alignm length: 348
Alignm identity: 247
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 82, 31

Conread position: 429-755
Cow position:
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 123

Conread position: 431-661
Cow position:
Alignm length: 234
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 75

Conread position: 431-744
Cow position:
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 270

Conread position: 432-604
Cow position:
Alignm length: 173
Alignm identity: 141
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 112, 0

Conread position: 433-707
Cow position:
Alignm length: 275
Alignm identity: 198
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 50, 0

Conread position: 438-581
Cow position:
Alignm length: 144
Alignm identity: 120
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 440-722
Cow position:
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 167

Conread position: 441-752
Cow position:
Alignm length: 318
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 114

Conread position: 452-684
Cow position:
Alignm length: 243
Alignm identity: 174
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 138, 23

Conread position: 454-752
Cow position:
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 44

Conread position: 459-605
Cow position:
Alignm length: 147
Alignm identity: 115
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 110, 0

Conread position: 459-750
Cow position:
Alignm length: 293
Alignm identity: 205
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 55, 59

Conread position: 463-756
Cow position:
Alignm length: 298
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 55

Conread position: 472-755
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 0

Conread position: 571-708
Cow position:
Alignm length: 138
Alignm identity: 103
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.