Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 172-458 |
| Cow position: | chr12:39455523-39455242 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 177-745 |
| Cow position: | chr12:26545265-26544693 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 52 |
| Conread position: | 211-755 |
| Cow position: | chr12:31709367-31709902 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 229-661 |
| Cow position: | chr12:10880503-10880940 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 18 |
| Conread position: | 232-396 |
| Cow position: | chr12:10412316-10412149 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 146, 67 |
| Conread position: | 232-500 |
| Cow position: | chr12:29029299-29029562 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 232-750 |
| Cow position: | chr12:23030821-23031326 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 13 |
| Conread position: | 250-754 |
| Cow position: | chr12:36863210-36863704 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 28 |
| Conread position: | 270-601 |
| Cow position: | chr12:11314552-11314889 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 273-411 |
| Cow position: | chr12:21009233-21009373 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 273-499 |
| Cow position: | chr12:27787978-27788203 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 273-581 |
| Cow position: | chr12:9226080-9226379 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 285, 26 |
| Conread position: | 273-605 |
| Cow position: | chr12:23476603-23476262 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 280-503 |
| Cow position: | chr12:23287084-23286856 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 299-741 |
| Cow position: | chr12:39567464-39567911 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 321-588 |
| Cow position: | chr12:37600729-37600999 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 323-551 |
| Cow position: | chr12:39438739-39438967 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 331-729 |
| Cow position: | chr12:42427741-42428148 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 333-742 |
| Cow position: | chr12:2698925-2699338 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 345-506 |
| Cow position: | chr12:4035536-4035372 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 373-588 |
| Cow position: | chr12:24005826-24005610 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 378-710 |
| Cow position: | chr12:26255711-26255360 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 320 |
| Conread position: | 387-570 |
| Cow position: | chr12:10411877-10411696 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 163, 28 |
| Conread position: | 420-604 |
| Cow position: | chr12:5949300-5949116 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 437-662 |
| Cow position: | chr12:7094724-7094494 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 85, 77 |
Show alignments to all cow chromosomes.