Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-755 |
| Cow position: | chr13:27688386-27688959 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 99 |
| Conread position: | 187-356 |
| Cow position: | chr13:14024425-14024258 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 203-509 |
| Cow position: | chr13:16571934-16571624 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 205-755 |
| Cow position: | chr13:62334401-62333877 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 212-755 |
| Cow position: | chr13:30478852-30479393 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 231-582 |
| Cow position: | chr13:3140322-3140676 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 65 |
| Conread position: | 250-394 |
| Cow position: | chr13:27931742-27931884 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 250-396 |
| Cow position: | chr13:12485832-12485684 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 250-509 |
| Cow position: | chr13:44225515-44225261 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 251-369 |
| Cow position: | chr13:44984913-44985029 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 258-604 |
| Cow position: | chr13:642794-643143 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 41 |
| Conread position: | 270-601 |
| Cow position: | chr13:41204458-41204120 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 273-550 |
| Cow position: | chr13:42260358-42260643 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 276-417 |
| Cow position: | chr13:45222146-45222285 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 298-577 |
| Cow position: | chr13:49507684-49507406 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 117 |
| Conread position: | 313-643 |
| Cow position: | chr13:4997067-4997396 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 321-755 |
| Cow position: | chr13:54633362-54632924 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 336-605 |
| Cow position: | chr13:15852313-15852589 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 215 |
| Conread position: | 370-575 |
| Cow position: | chr13:14023860-14023657 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 376-755 |
| Cow position: | chr13:33243951-33244328 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 131 |
| Conread position: | 378-749 |
| Cow position: | chr13:17490912-17490541 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 21 |
| Conread position: | 379-515 |
| Cow position: | chr13:32704510-32704645 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 386-753 |
| Cow position: | chr13:54628960-54629328 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 62 |
| Conread position: | 419-755 |
| Cow position: | chr13:47179280-47178939 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 138 |
| Conread position: | 420-755 |
| Cow position: | chr13:58020781-58020447 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 41 |
| Conread position: | 421-754 |
| Cow position: | chr13:12485570-12485237 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 169 |
| Conread position: | 429-647 |
| Cow position: | chr13:31487570-31487359 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 441-755 |
| Cow position: | chr13:44985147-44985462 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 123 |
| Conread position: | 459-752 |
| Cow position: | chr13:45307334-45307627 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 146, 95 |
| Conread position: | 459-755 |
| Cow position: | chr13:54519699-54519392 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 472-650 |
| Cow position: | chr13:27932218-27932394 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 472-750 |
| Cow position: | chr13:52416427-52416156 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 117 |
| Conread position: | 540-752 |
| Cow position: | chr13:32704650-32704862 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 567-756 |
| Cow position: | chr13:49507371-49507184 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 586-755 |
| Cow position: | chr13:14022490-14022321 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 612-755 |
| Cow position: | chr13:54724050-54723908 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.