Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 187-601 |
| Cow position: | chr15:15237395-15236987 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 203-412 |
| Cow position: | chr15:1996724-1996510 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 205-756 |
| Cow position: | chr15:34401120-34401665 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 207-580 |
| Cow position: | chr15:38619393-38619024 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 212-642 |
| Cow position: | chr15:16896795-16896390 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 212-708 |
| Cow position: | chr15:50744210-50744708 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 231-414 |
| Cow position: | chr15:51449674-51449863 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 231-470 |
| Cow position: | chr15:50555118-50555348 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 231-756 |
| Cow position: | chr15:17697766-17697231 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 232-449 |
| Cow position: | chr15:12726615-12726827 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 164, 46 |
| Conread position: | 241-605 |
| Cow position: | chr15:5123950-5124306 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 263-458 |
| Cow position: | chr15:37892336-37892533 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 263-631 |
| Cow position: | chr15:14472583-14472231 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 36 |
| Conread position: | 273-422 |
| Cow position: | chr15:28072554-28072403 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 273-503 |
| Cow position: | chr15:32498382-32498613 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 101, 27 |
| Conread position: | 299-583 |
| Cow position: | chr15:18228002-18228278 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 300-755 |
| Cow position: | chr15:16923407-16922950 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 313-756 |
| Cow position: | chr15:22249201-22248768 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 321-581 |
| Cow position: | chr15:603840-603572 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 321-755 |
| Cow position: | chr15:12825124-12824715 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 350-708 |
| Cow position: | chr15:52931310-52930945 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 303 |
| Conread position: | 353-755 |
| Cow position: | chr15:13910732-13910326 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 54 |
| Conread position: | 370-707 |
| Cow position: | chr15:18250667-18250339 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 163, 209 |
| Conread position: | 372-740 |
| Cow position: | chr15:1996496-1996119 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 188 |
| Conread position: | 376-755 |
| Cow position: | chr15:28094474-28094845 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 37 |
| Conread position: | 426-756 |
| Cow position: | chr15:3278350-3278027 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 87 |
| Conread position: | 430-605 |
| Cow position: | chr15:20732973-20732800 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 437-556 |
| Cow position: | chr15:12768838-12768720 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 437-755 |
| Cow position: | chr15:10346009-10345692 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 440-755 |
| Cow position: | chr15:51450528-51450848 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 276 |
| Conread position: | 443-755 |
| Cow position: | chr15:12727029-12727318 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 481-755 |
| Cow position: | chr15:29658432-29658150 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 239 |
| Conread position: | 503-752 |
| Cow position: | chr15:17639575-17639812 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 108, 86 |
| Conread position: | 538-755 |
| Cow position: | chr15:19195294-19195501 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 547-755 |
| Cow position: | chr15:52814114-52813906 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 558-755 |
| Cow position: | chr15:31029338-31029531 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 155 |
| Conread position: | 570-754 |
| Cow position: | chr15:41164412-41164225 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 142 |
| Conread position: | 612-756 |
| Cow position: | chr15:603519-603375 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.