Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 187-467 |
| Cow position: | chr16:31141044-31141326 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 187-605 |
| Cow position: | chr16:19937197-19936779 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 187-707 |
| Cow position: | chr16:16579930-16579423 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 217-390 |
| Cow position: | chr16:52032346-52032510 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 227-655 |
| Cow position: | chr16:2717188-2716771 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 72 |
| Conread position: | 229-465 |
| Cow position: | chr16:41376750-41376512 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 148, 69 |
| Conread position: | 231-436 |
| Cow position: | chr16:54397610-54397403 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 231-756 |
| Cow position: | chr16:190434-189900 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 33 |
| Conread position: | 232-378 |
| Cow position: | chr16:7180090-7180234 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 232-542 |
| Cow position: | chr16:48797223-48797534 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 69 |
| Conread position: | 232-548 |
| Cow position: | chr16:27234752-27234447 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 67 |
| Conread position: | 232-548 |
| Cow position: | chr16:53941280-53940965 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 233-638 |
| Cow position: | chr16:32072204-32072616 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 29 |
| Conread position: | 242-391 |
| Cow position: | chr16:49822658-49822806 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 249-603 |
| Cow position: | chr16:38447910-38447558 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 50 |
| Conread position: | 250-411 |
| Cow position: | chr16:49098066-49098229 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 250-745 |
| Cow position: | chr16:37069982-37069474 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 250-755 |
| Cow position: | chr16:33902259-33901759 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 251-650 |
| Cow position: | chr16:23886581-23886199 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 48 |
| Conread position: | 259-498 |
| Cow position: | chr16:28698447-28698204 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 270-601 |
| Cow position: | chr16:48798778-48798443 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 273-487 |
| Cow position: | chr16:9913203-9912981 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 273-503 |
| Cow position: | chr16:23309434-23309199 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 273-507 |
| Cow position: | chr16:5814763-5815003 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 273-755 |
| Cow position: | chr16:52270456-52269976 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 23 |
| Conread position: | 275-503 |
| Cow position: | chr16:5795427-5795661 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 275-557 |
| Cow position: | chr16:31147175-31146886 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 285-591 |
| Cow position: | chr16:38592417-38592725 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 321-698 |
| Cow position: | chr16:56200857-56201227 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 11 |
| Conread position: | 322-554 |
| Cow position: | chr16:49213048-49213271 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 192, 12 |
| Conread position: | 336-755 |
| Cow position: | chr16:52631181-52631595 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 342-496 |
| Cow position: | chr16:37013439-37013588 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 345-745 |
| Cow position: | chr16:12490288-12490692 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 347-555 |
| Cow position: | chr16:53382475-53382691 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 357-591 |
| Cow position: | chr16:44249958-44249720 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 167 |
| Conread position: | 370-610 |
| Cow position: | chr16:16630810-16631046 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 370-755 |
| Cow position: | chr16:7180288-7180660 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 370-755 |
| Cow position: | chr16:38443913-38443540 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 239 |
| Conread position: | 378-557 |
| Cow position: | chr16:22717684-22717864 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 421-604 |
| Cow position: | chr16:29619138-29619314 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 433-755 |
| Cow position: | chr16:49822899-49823220 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 275 |
| Conread position: | 437-602 |
| Cow position: | chr16:31143487-31143651 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 437-755 |
| Cow position: | chr16:54397370-54397058 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 102 |
| Conread position: | 438-755 |
| Cow position: | chr16:22930067-22929765 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 459-755 |
| Cow position: | chr16:22836444-22836154 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 121, 72 |
| Conread position: | 487-755 |
| Cow position: | chr16:37013866-37014129 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 488-709 |
| Cow position: | chr16:41376075-41375851 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 118, 69 |
| Conread position: | 606-755 |
| Cow position: | chr16:29619473-29619619 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 612-755 |
| Cow position: | chr16:16631285-16631428 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.