Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 187-372 |
| Cow position: | chr17:29767983-29767807 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 187-372 |
| Cow position: | chr17:41925497-41925321 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 205-476 |
| Cow position: | chr17:25719020-25719291 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 206-360 |
| Cow position: | chr17:36606916-36607064 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 231-503 |
| Cow position: | chr17:10199598-10199332 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 220, 68 |
| Conread position: | 231-576 |
| Cow position: | chr17:8116869-8116529 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 40 |
| Conread position: | 232-379 |
| Cow position: | chr17:8446677-8446820 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 232-412 |
| Cow position: | chr17:1238277-1238093 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 147, 68 |
| Conread position: | 232-484 |
| Cow position: | chr17:3446893-3446646 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 219, 10 |
| Conread position: | 232-755 |
| Cow position: | chr17:25742895-25743417 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 67 |
| Conread position: | 233-463 |
| Cow position: | chr17:21382969-21383196 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 235-411 |
| Cow position: | chr17:11140330-11140498 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 235-570 |
| Cow position: | chr17:44534971-44534657 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 62 |
| Conread position: | 247-413 |
| Cow position: | chr17:44533914-44534076 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 250-641 |
| Cow position: | chr17:23790012-23789626 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 49 |
| Conread position: | 253-413 |
| Cow position: | chr17:31831848-31831686 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 273-503 |
| Cow position: | chr17:39245346-39245112 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 278-473 |
| Cow position: | chr17:16391568-16391375 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 289-755 |
| Cow position: | chr17:22840711-22841174 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 309-695 |
| Cow position: | chr17:21390752-21390365 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 104 |
| Conread position: | 321-755 |
| Cow position: | chr17:17630687-17630273 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 322-752 |
| Cow position: | chr17:6214234-6214670 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 356-752 |
| Cow position: | chr17:8119524-8119120 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 370-518 |
| Cow position: | chr17:11140515-11140663 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 370-548 |
| Cow position: | chr17:30016903-30016727 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 376-531 |
| Cow position: | chr17:29767533-29767377 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 380-576 |
| Cow position: | chr17:37403396-37403590 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 147, 41 |
| Conread position: | 387-581 |
| Cow position: | chr17:31831663-31831476 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 443-600 |
| Cow position: | chr17:41924892-41924736 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 115, 121 |
| Conread position: | 467-755 |
| Cow position: | chr17:16391153-16390861 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 470-599 |
| Cow position: | chr17:3088475-3088603 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 475-698 |
| Cow position: | chr17:36320594-36320817 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 129, 175 |
| Conread position: | 475-755 |
| Cow position: | chr17:1237679-1237398 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 146 |
| Conread position: | 496-755 |
| Cow position: | chr17:3446271-3446015 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 503-755 |
| Cow position: | chr17:8446905-8447155 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 555-750 |
| Cow position: | chr17:36608291-36608488 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 158 |
| Conread position: | 566-755 |
| Cow position: | chr17:37403806-37403991 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.