Cow genome map


           Conread name:
           Ss1.1-rplun0112_o20.5
        

               Conread position:
               177-403
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 133
               

               Conread position:
               177-421
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               187-601
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 75
               

               Conread position:
               188-755
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               381
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               42, 72
               

               Conread position:
               194-610
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 82
               

               Conread position:
               195-600
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 50
               

               Conread position:
               200-500
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 56
               

               Conread position:
               205-414
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               165
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               205-504
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               296, 27
               

               Conread position:
               205-601
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               216-610
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 17
               

               Conread position:
               221-411
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               231-412
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               150, 68
               

               Conread position:
               231-754
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 68
               

               Conread position:
               232-411
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               152
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               149, 67
               

               Conread position:
               232-459
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               145, 68
               

               Conread position:
               232-516
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 67
               

               Conread position:
               232-707
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 34
               

               Conread position:
               233-754
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 66
               

               Conread position:
               236-509
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               215, 64
               

               Conread position:
               241-412
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               242-755
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 57
               

               Conread position:
               243-707
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 56
               

               Conread position:
               250-755
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 49
               

               Conread position:
               269-745
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 30
               

               Conread position:
               270-556
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 31
               

               Conread position:
               270-574
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 27
               

               Conread position:
               273-372
               

               Cow position:
               
               

               Alignm length:
               100
               

               Alignm identity:
               85
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               298-603
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 120
               

               Conread position:
               298-708
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 336
               

               Conread position:
               298-749
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 12
               

               Conread position:
               322-755
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               343-700
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 306
               

               Conread position:
               368-512
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               23, 37
               

               Conread position:
               370-754
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 37
               

               Conread position:
               371-664
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               45, 189
               

               Conread position:
               371-755
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 44
               

               Conread position:
               378-601
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               13, 58
               

               Conread position:
               378-755
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 37
               

               Conread position:
               385-755
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 30
               

               Conread position:
               420-561
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               105, 53
               

               Conread position:
               426-707
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               433-604
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               70, 80
               

               Conread position:
               444-610
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               449-608
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 71
               

               Conread position:
               460-755
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 19
               

               Conread position:
               466-755
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               472-755
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 45
               

               Conread position:
               497-755
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               16, 227
               

               Conread position:
               500-755
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               33, 135
               

               Conread position:
               533-755
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               75, 6
               

               Conread position:
               539-752
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               77, 63
               
Show alignments to all cow chromosomes.