Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-403 |
| Cow position: | chr18:13703124-13702890 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 177-421 |
| Cow position: | chr18:16405567-16405326 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 187-601 |
| Cow position: | chr18:55512041-55512454 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 188-755 |
| Cow position: | chr18:41782864-41782302 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 381 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 194-610 |
| Cow position: | chr18:4980987-4980583 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 82 |
| Conread position: | 195-600 |
| Cow position: | chr18:1094863-1095269 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 200-500 |
| Cow position: | chr18:9159452-9159153 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 56 |
| Conread position: | 205-414 |
| Cow position: | chr18:4769563-4769768 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 205-504 |
| Cow position: | chr18:29605264-29604986 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 296, 27 |
| Conread position: | 205-601 |
| Cow position: | chr18:3506513-3506127 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 216-610 |
| Cow position: | chr18:16360033-16359644 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 221-411 |
| Cow position: | chr18:42816670-42816856 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 231-412 |
| Cow position: | chr18:41423921-41424104 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 231-754 |
| Cow position: | chr18:46093135-46092630 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 68 |
| Conread position: | 232-411 |
| Cow position: | chr18:40055929-40056109 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 149, 67 |
| Conread position: | 232-459 |
| Cow position: | chr18:15808812-15808585 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 145, 68 |
| Conread position: | 232-516 |
| Cow position: | chr18:23314012-23314295 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 232-707 |
| Cow position: | chr18:11228226-11227754 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 233-754 |
| Cow position: | chr18:44075563-44075040 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 66 |
| Conread position: | 236-509 |
| Cow position: | chr18:47114339-47114606 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 215, 64 |
| Conread position: | 241-412 |
| Cow position: | chr18:4172668-4172837 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 242-755 |
| Cow position: | chr18:53534051-53533550 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 57 |
| Conread position: | 243-707 |
| Cow position: | chr18:54137145-54137599 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 250-755 |
| Cow position: | chr18:53967682-53967173 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 269-745 |
| Cow position: | chr18:13728560-13729028 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 30 |
| Conread position: | 270-556 |
| Cow position: | chr18:17307932-17308223 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 270-574 |
| Cow position: | chr18:34766489-34766801 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 273-372 |
| Cow position: | chr18:11993865-11993962 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 298-603 |
| Cow position: | chr18:29641609-29641301 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 120 |
| Conread position: | 298-708 |
| Cow position: | chr18:42287500-42287919 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 336 |
| Conread position: | 298-749 |
| Cow position: | chr18:9188891-9188449 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 322-755 |
| Cow position: | chr18:46094163-46093726 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 343-700 |
| Cow position: | chr18:8270698-8270332 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 306 |
| Conread position: | 368-512 |
| Cow position: | chr18:15807054-15807199 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 370-754 |
| Cow position: | chr18:28100599-28100222 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 37 |
| Conread position: | 371-664 |
| Cow position: | chr18:32858340-32858049 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 371-755 |
| Cow position: | chr18:4769782-4770172 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 378-601 |
| Cow position: | chr18:2058388-2058599 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 378-755 |
| Cow position: | chr18:49886037-49886422 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 385-755 |
| Cow position: | chr18:8339771-8339409 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 420-561 |
| Cow position: | chr18:28148726-28148585 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 53 |
| Conread position: | 426-707 |
| Cow position: | chr18:1783364-1783102 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 433-604 |
| Cow position: | chr18:50054871-50055042 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 444-610 |
| Cow position: | chr18:4172946-4173106 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 449-608 |
| Cow position: | chr18:41424330-41424486 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 460-755 |
| Cow position: | chr18:16405195-16404897 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 19 |
| Conread position: | 466-755 |
| Cow position: | chr18:15808429-15808143 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 472-755 |
| Cow position: | chr18:42818766-42819055 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 497-755 |
| Cow position: | chr18:44527901-44528165 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 227 |
| Conread position: | 500-755 |
| Cow position: | chr18:29604774-29604513 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 135 |
| Conread position: | 533-755 |
| Cow position: | chr18:15807731-15807955 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 539-752 |
| Cow position: | chr18:53804551-53804338 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 77, 63 |
Show alignments to all cow chromosomes.