Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 180-755 |
| Cow position: | chr19:5691827-5692420 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 181-487 |
| Cow position: | chr19:6155134-6155435 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 187-482 |
| Cow position: | chr19:1022723-1023018 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 187-707 |
| Cow position: | chr19:6666036-6666533 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 187-707 |
| Cow position: | chr19:6676562-6677059 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 350 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 187-756 |
| Cow position: | chr19:28422671-28422086 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 198-471 |
| Cow position: | chr19:30145889-30145612 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 200-755 |
| Cow position: | chr19:40118307-40118870 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 205-387 |
| Cow position: | chr19:8733789-8733982 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 205-396 |
| Cow position: | chr19:28434014-28434214 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 205-605 |
| Cow position: | chr19:36406781-36406384 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 216-756 |
| Cow position: | chr19:12447767-12448309 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 231-435 |
| Cow position: | chr19:39289378-39289177 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 96, 68 |
| Conread position: | 231-514 |
| Cow position: | chr19:1020847-1021128 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 232-367 |
| Cow position: | chr19:28439337-28439470 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 232-368 |
| Cow position: | chr19:4325204-4325070 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 232-553 |
| Cow position: | chr19:14538425-14538742 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 34 |
| Conread position: | 232-642 |
| Cow position: | chr19:9361117-9360723 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 232-754 |
| Cow position: | chr19:23811907-23812427 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 68 |
| Conread position: | 237-375 |
| Cow position: | chr19:28442119-28442254 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 240-451 |
| Cow position: | chr19:13331718-13331516 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 248-469 |
| Cow position: | chr19:28423208-28423425 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 250-448 |
| Cow position: | chr19:54691202-54691004 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 250-746 |
| Cow position: | chr19:49806802-49806319 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 263-549 |
| Cow position: | chr19:27005635-27005930 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 211, 36 |
| Conread position: | 270-755 |
| Cow position: | chr19:9459291-9458833 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 275-601 |
| Cow position: | chr19:41604767-41604442 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 286-755 |
| Cow position: | chr19:37303302-37302849 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 291-755 |
| Cow position: | chr19:51213181-51213636 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 5 |
| Conread position: | 298-422 |
| Cow position: | chr19:40294282-40294410 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 298-601 |
| Cow position: | chr19:28663703-28664010 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 321-755 |
| Cow position: | chr19:915855-915420 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 351-479 |
| Cow position: | chr19:47855966-47856098 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 354-600 |
| Cow position: | chr19:17222397-17222159 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 366-752 |
| Cow position: | chr19:961641-962017 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 373-755 |
| Cow position: | chr19:28434372-28434750 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 387-603 |
| Cow position: | chr19:2789307-2789520 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 112, 28 |
| Conread position: | 396-554 |
| Cow position: | chr19:28468982-28469139 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 417-698 |
| Cow position: | chr19:8733985-8734268 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 90 |
| Conread position: | 426-626 |
| Cow position: | chr19:31629099-31629300 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 444-636 |
| Cow position: | chr19:13327896-13327703 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 163, 51 |
| Conread position: | 459-603 |
| Cow position: | chr19:28423702-28423845 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 461-755 |
| Cow position: | chr19:30145332-30145037 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 191 |
| Conread position: | 493-755 |
| Cow position: | chr19:28442871-28443132 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 113, 24 |
| Conread position: | 502-702 |
| Cow position: | chr19:26680354-26680151 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 102, 128 |
| Conread position: | 570-755 |
| Cow position: | chr19:14538961-14539146 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 577-755 |
| Cow position: | chr19:3750193-3750374 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
Show alignments to all cow chromosomes.