Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 172-686 |
| Cow position: | chr2:55498752-55499267 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 180-601 |
| Cow position: | chr2:15343416-15343009 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 187-591 |
| Cow position: | chr2:57318188-57317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 194-506 |
| Cow position: | chr2:61456842-61456531 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 202-441 |
| Cow position: | chr2:9696573-9696341 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 175, 7 |
| Conread position: | 203-471 |
| Cow position: | chr2:57647111-57647381 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 97 |
| Conread position: | 205-485 |
| Cow position: | chr2:20233888-20234174 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 212-451 |
| Cow position: | chr2:41437720-41437495 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 216-604 |
| Cow position: | chr2:47530988-47531376 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 60 |
| Conread position: | 231-397 |
| Cow position: | chr2:37725603-37725767 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 232-412 |
| Cow position: | chr2:1333610-1333792 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 147, 67 |
| Conread position: | 232-422 |
| Cow position: | chr2:38902465-38902657 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 103, 23 |
| Conread position: | 232-490 |
| Cow position: | chr2:4880093-4880344 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 159, 72 |
| Conread position: | 232-550 |
| Cow position: | chr2:7309795-7309485 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 34 |
| Conread position: | 232-752 |
| Cow position: | chr2:26282307-26282835 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 69 |
| Conread position: | 236-568 |
| Cow position: | chr2:56299728-56300057 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 237-752 |
| Cow position: | chr2:47000171-46999650 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 62 |
| Conread position: | 240-447 |
| Cow position: | chr2:959778-959984 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 137, 26 |
| Conread position: | 241-412 |
| Cow position: | chr2:76046324-76046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 136, 58 |
| Conread position: | 263-578 |
| Cow position: | chr2:31079499-31079179 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 267-755 |
| Cow position: | chr2:2667806-2667332 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 270-512 |
| Cow position: | chr2:2472155-2471908 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 270-586 |
| Cow position: | chr2:64662421-64662741 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 270-605 |
| Cow position: | chr2:39380344-39380026 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 146, 29 |
| Conread position: | 273-499 |
| Cow position: | chr2:55380934-55381167 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 273-504 |
| Cow position: | chr2:6416797-6417030 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 287-503 |
| Cow position: | chr2:1964289-1964510 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 298-489 |
| Cow position: | chr2:80088522-80088723 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 299-728 |
| Cow position: | chr2:35900081-35900507 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 35 |
| Conread position: | 299-752 |
| Cow position: | chr2:20585131-20585565 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 88, 8 |
| Conread position: | 305-411 |
| Cow position: | chr2:75353808-75353698 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 313-577 |
| Cow position: | chr2:41362547-41362812 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 24, 205 |
| Conread position: | 313-604 |
| Cow position: | chr2:61865384-61865677 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 313-752 |
| Cow position: | chr2:38839026-38839466 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 321-753 |
| Cow position: | chr2:74664819-74665229 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 322-753 |
| Cow position: | chr2:49000279-49000704 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 306 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 323-603 |
| Cow position: | chr2:34585670-34585946 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 323-620 |
| Cow position: | chr2:39758500-39758187 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 335-695 |
| Cow position: | chr2:70183423-70183072 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 82 |
| Conread position: | 335-756 |
| Cow position: | chr2:39877684-39878103 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 147 |
| Conread position: | 336-660 |
| Cow position: | chr2:2482809-2482492 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 354-709 |
| Cow position: | chr2:44344872-44344520 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 382-687 |
| Cow position: | chr2:47127811-47127501 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 387-638 |
| Cow position: | chr2:9581125-9581375 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 28 |
| Conread position: | 388-684 |
| Cow position: | chr2:1481357-1481649 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 188, 60 |
| Conread position: | 416-755 |
| Cow position: | chr2:82140800-82140464 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 136 |
| Conread position: | 431-707 |
| Cow position: | chr2:38902884-38903167 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 17 |
| Conread position: | 437-756 |
| Cow position: | chr2:77519109-77518781 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 69 |
| Conread position: | 441-605 |
| Cow position: | chr2:41437347-41437189 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 445-591 |
| Cow position: | chr2:76045690-76045545 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 445-603 |
| Cow position: | chr2:57343559-57343403 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 456-753 |
| Cow position: | chr2:38168461-38168759 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 207 |
| Conread position: | 468-693 |
| Cow position: | chr2:9696345-9696117 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 138, 113 |
| Conread position: | 472-750 |
| Cow position: | chr2:57647585-57647861 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 552-755 |
| Cow position: | chr2:39871798-39872002 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 54, 149 |
| Conread position: | 553-755 |
| Cow position: | chr2:7309260-7309058 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 557-755 |
| Cow position: | chr2:25651184-25651379 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 570-751 |
| Cow position: | chr2:2191877-2192058 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 595-755 |
| Cow position: | chr2:43881178-43881020 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 119, 0 |
Show alignments to all cow chromosomes.