Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 172-379 |
| Cow position: | chr21:3392395-3392191 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 176-411 |
| Cow position: | chr21:10736628-10736393 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 187-471 |
| Cow position: | chr21:35052364-35052061 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 187-539 |
| Cow position: | chr21:3981057-3981411 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 187-571 |
| Cow position: | chr21:3384030-3383653 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 187-601 |
| Cow position: | chr21:44726352-44725943 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 187-755 |
| Cow position: | chr21:6195270-6195805 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 375 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 203-490 |
| Cow position: | chr21:11263298-11263003 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 205-755 |
| Cow position: | chr21:8404714-8404188 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 207-755 |
| Cow position: | chr21:22397383-22397917 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 21 |
| Conread position: | 212-511 |
| Cow position: | chr21:44568181-44568479 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 231-410 |
| Cow position: | chr21:3387834-3387653 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 231-477 |
| Cow position: | chr21:46775369-46775616 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 68 |
| Conread position: | 232-374 |
| Cow position: | chr21:41537832-41537692 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 232-447 |
| Cow position: | chr21:39666009-39666223 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 145, 65 |
| Conread position: | 233-410 |
| Cow position: | chr21:44560609-44560777 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-554 |
| Cow position: | chr21:14141934-14141611 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 66 |
| Conread position: | 233-581 |
| Cow position: | chr21:11253454-11253104 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 249-405 |
| Cow position: | chr21:10211623-10211466 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 249-594 |
| Cow position: | chr21:15706624-15706971 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 50 |
| Conread position: | 263-448 |
| Cow position: | chr21:29197895-29198072 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 165, 37 |
| Conread position: | 270-542 |
| Cow position: | chr21:48363767-48364044 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 273-507 |
| Cow position: | chr21:19419445-19419207 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 273-753 |
| Cow position: | chr21:44545717-44545266 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 286-755 |
| Cow position: | chr21:27664949-27664493 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 295-449 |
| Cow position: | chr21:11226624-11226468 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 301-755 |
| Cow position: | chr21:13830259-13829804 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 60 |
| Conread position: | 309-755 |
| Cow position: | chr21:13534591-13534148 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 313-700 |
| Cow position: | chr21:8855721-8856113 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 332-752 |
| Cow position: | chr21:11121715-11122129 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 335-575 |
| Cow position: | chr21:32402516-32402756 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 345-643 |
| Cow position: | chr21:48306415-48306717 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 175 |
| Conread position: | 356-756 |
| Cow position: | chr21:15245134-15245528 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 215 |
| Conread position: | 360-752 |
| Cow position: | chr21:34729483-34729872 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 55 |
| Conread position: | 361-755 |
| Cow position: | chr21:48470024-48469638 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 365-555 |
| Cow position: | chr21:42059129-42059323 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-590 |
| Cow position: | chr21:18993766-18993549 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 380-752 |
| Cow position: | chr21:48362484-48362853 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 387-755 |
| Cow position: | chr21:41537380-41537028 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 216, 28 |
| Conread position: | 419-695 |
| Cow position: | chr21:29198272-29198550 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 32, 137 |
| Conread position: | 419-755 |
| Cow position: | chr21:6201687-6201997 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 421-755 |
| Cow position: | chr21:10736105-10735774 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 70 |
| Conread position: | 427-753 |
| Cow position: | chr21:32431709-32432026 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 163, 268 |
| Conread position: | 443-633 |
| Cow position: | chr21:36868968-36868774 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 447-755 |
| Cow position: | chr21:3392100-3391805 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 449-664 |
| Cow position: | chr21:44714227-44714018 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 157, 59 |
| Conread position: | 472-755 |
| Cow position: | chr21:11225947-11225666 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 136, 81 |
| Conread position: | 472-755 |
| Cow position: | chr21:44561097-44561379 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 481-605 |
| Cow position: | chr21:46541667-46541543 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 37 |
| Conread position: | 504-755 |
| Cow position: | chr21:11669408-11669648 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 632-755 |
| Cow position: | chr21:42059728-42059850 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.