Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 186-411 |
| Cow position: | chr25:4229205-4228976 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 194-405 |
| Cow position: | chr25:22129474-22129688 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 93, 106 |
| Conread position: | 203-471 |
| Cow position: | chr25:11861894-11862167 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 205-471 |
| Cow position: | chr25:2719824-2720102 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 205-484 |
| Cow position: | chr25:5779966-5780246 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 227-619 |
| Cow position: | chr25:26098182-26097798 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 72 |
| Conread position: | 232-698 |
| Cow position: | chr25:20480663-20480200 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 232-707 |
| Cow position: | chr25:27376027-27375557 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 67 |
| Conread position: | 250-357 |
| Cow position: | chr25:16113053-16113158 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 252-604 |
| Cow position: | chr25:1591494-1591154 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 263-754 |
| Cow position: | chr25:23567224-23566747 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 34 |
| Conread position: | 263-755 |
| Cow position: | chr25:10167766-10168239 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 36 |
| Conread position: | 270-487 |
| Cow position: | chr25:10601948-10602173 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 270-755 |
| Cow position: | chr25:14548388-14548854 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 286-581 |
| Cow position: | chr25:15917304-15917602 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 289-755 |
| Cow position: | chr25:21665085-21664620 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 10 |
| Conread position: | 290-755 |
| Cow position: | chr25:1780908-1781370 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 8 |
| Conread position: | 309-755 |
| Cow position: | chr25:21293363-21293801 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 313-710 |
| Cow position: | chr25:25952320-25951915 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 322-755 |
| Cow position: | chr25:3735841-3735407 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 20 |
| Conread position: | 361-756 |
| Cow position: | chr25:19452706-19452310 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 363-555 |
| Cow position: | chr25:21655357-21655162 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 366-603 |
| Cow position: | chr25:30065915-30065677 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 202, 48 |
| Conread position: | 374-709 |
| Cow position: | chr25:22129715-22130046 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 374-755 |
| Cow position: | chr25:15970626-15970247 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 93 |
| Conread position: | 382-534 |
| Cow position: | chr25:4012478-4012327 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 430-756 |
| Cow position: | chr25:4228907-4228598 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 201, 34 |
| Conread position: | 431-686 |
| Cow position: | chr25:38162787-38162530 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 173, 138 |
| Conread position: | 437-605 |
| Cow position: | chr25:1849399-1849232 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 459-755 |
| Cow position: | chr25:16113587-16113884 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 145, 92 |
| Conread position: | 461-576 |
| Cow position: | chr25:11862362-11862477 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-605 |
| Cow position: | chr25:2722473-2722618 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 96, 134 |
| Conread position: | 464-601 |
| Cow position: | chr25:5780359-5780495 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 467-755 |
| Cow position: | chr25:31772-31476 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 101, 192 |
| Conread position: | 612-753 |
| Cow position: | chr25:30065196-30065057 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.