Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 172-755 |
| Cow position: | chr29:31843138-31843735 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 140 |
| Conread position: | 203-593 |
| Cow position: | chr29:44695724-44695326 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 232-412 |
| Cow position: | chr29:13561793-13561611 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 149, 67 |
| Conread position: | 247-424 |
| Cow position: | chr29:13501921-13501741 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 250-755 |
| Cow position: | chr29:19651809-19651305 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 256-755 |
| Cow position: | chr29:10289301-10289792 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 43 |
| Conread position: | 266-450 |
| Cow position: | chr29:348946-349135 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 266-457 |
| Cow position: | chr29:40057299-40057492 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 270-601 |
| Cow position: | chr29:31650276-31649937 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 270-755 |
| Cow position: | chr29:3550845-3550366 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 172 |
| Conread position: | 273-503 |
| Cow position: | chr29:36071710-36071947 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 273-503 |
| Cow position: | chr29:40482370-40482606 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 273-504 |
| Cow position: | chr29:43015567-43015804 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 275-755 |
| Cow position: | chr29:8790217-8790681 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 208 |
| Conread position: | 278-426 |
| Cow position: | chr29:12446068-12445919 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 298-410 |
| Cow position: | chr29:4242781-4242664 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 321-562 |
| Cow position: | chr29:31663749-31663504 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 96 |
| Conread position: | 321-578 |
| Cow position: | chr29:3104310-3104049 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 321-578 |
| Cow position: | chr29:3143855-3143592 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 321-707 |
| Cow position: | chr29:5224736-5224349 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 321-756 |
| Cow position: | chr29:30241877-30241443 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 350-598 |
| Cow position: | chr29:25914575-25914822 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 350-661 |
| Cow position: | chr29:10662444-10662127 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 305 |
| Conread position: | 356-756 |
| Cow position: | chr29:11282976-11282566 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 370-755 |
| Cow position: | chr29:13501700-13501318 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 45 |
| Conread position: | 370-755 |
| Cow position: | chr29:19662774-19662392 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 371-610 |
| Cow position: | chr29:33648799-33648562 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 378-755 |
| Cow position: | chr29:22784828-22784449 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 422-749 |
| Cow position: | chr29:565479-565770 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 423-745 |
| Cow position: | chr29:30207927-30208245 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 26 |
| Conread position: | 426-586 |
| Cow position: | chr29:28983013-28983172 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 429-680 |
| Cow position: | chr29:4242577-4242326 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 439-752 |
| Cow position: | chr29:37071700-37071387 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 75 |
| Conread position: | 447-702 |
| Cow position: | chr29:349432-349688 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 145, 39 |
| Conread position: | 450-627 |
| Cow position: | chr29:24045181-24045358 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 156, 33 |
| Conread position: | 459-605 |
| Cow position: | chr29:40057567-40057713 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 471-664 |
| Cow position: | chr29:13560662-13560465 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 486-642 |
| Cow position: | chr29:29165368-29165516 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 492-747 |
| Cow position: | chr29:919326-919565 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 500-645 |
| Cow position: | chr29:4769571-4769719 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 504-707 |
| Cow position: | chr29:36176035-36175832 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 109, 15 |
Show alignments to all cow chromosomes.