Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-395 |
| Cow position: | chr3:52400149-52399934 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 182-708 |
| Cow position: | chr3:67818337-67817807 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 118 |
| Conread position: | 203-581 |
| Cow position: | chr3:7851477-7851862 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 203-755 |
| Cow position: | chr3:313434-312877 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 205-601 |
| Cow position: | chr3:34210745-34211133 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 205-601 |
| Cow position: | chr3:61213361-61212973 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 206-467 |
| Cow position: | chr3:38305081-38305328 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 229-376 |
| Cow position: | chr3:72581209-72581072 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 229-423 |
| Cow position: | chr3:61964607-61964423 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 152, 69 |
| Conread position: | 229-707 |
| Cow position: | chr3:25576846-25576365 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 231-376 |
| Cow position: | chr3:5158504-5158362 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 231-755 |
| Cow position: | chr3:30383696-30383169 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 13 |
| Conread position: | 232-449 |
| Cow position: | chr3:3395599-3395813 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 34 |
| Conread position: | 232-482 |
| Cow position: | chr3:2657645-2657409 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 218, 9 |
| Conread position: | 232-752 |
| Cow position: | chr3:5164143-5163634 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 64 |
| Conread position: | 232-754 |
| Cow position: | chr3:5449035-5449534 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 234-368 |
| Cow position: | chr3:23429696-23429829 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 234-707 |
| Cow position: | chr3:36005284-36005760 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 235-409 |
| Cow position: | chr3:7836291-7836467 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 58 |
| Conread position: | 241-755 |
| Cow position: | chr3:7827769-7827255 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 59 |
| Conread position: | 247-697 |
| Cow position: | chr3:74798284-74798744 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 52 |
| Conread position: | 249-687 |
| Cow position: | chr3:44956522-44956084 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 50 |
| Conread position: | 250-456 |
| Cow position: | chr3:7821245-7821036 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 127, 49 |
| Conread position: | 252-701 |
| Cow position: | chr3:21714474-21714021 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 43 |
| Conread position: | 263-581 |
| Cow position: | chr3:67459896-67460210 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 36 |
| Conread position: | 270-601 |
| Cow position: | chr3:41038499-41038163 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 273-503 |
| Cow position: | chr3:19217423-19217653 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 273-503 |
| Cow position: | chr3:32427491-32427720 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 273-506 |
| Cow position: | chr3:67463018-67463252 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 275-755 |
| Cow position: | chr3:5427623-5427160 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 24 |
| Conread position: | 281-424 |
| Cow position: | chr3:23087971-23088113 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 287-482 |
| Cow position: | chr3:18063780-18063578 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 305-749 |
| Cow position: | chr3:10899888-10900302 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 321-562 |
| Cow position: | chr3:523842-524082 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 321-575 |
| Cow position: | chr3:34227856-34228108 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 321-752 |
| Cow position: | chr3:2672506-2672939 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 321-756 |
| Cow position: | chr3:23185603-23186041 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 329-588 |
| Cow position: | chr3:34890234-34890494 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 184 |
| Conread position: | 335-589 |
| Cow position: | chr3:7775726-7775476 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 337-562 |
| Cow position: | chr3:533570-533794 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 370-581 |
| Cow position: | chr3:23088118-23088327 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 370-610 |
| Cow position: | chr3:19200815-19200575 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 370-755 |
| Cow position: | chr3:24413622-24413246 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 370-755 |
| Cow position: | chr3:27559442-27559049 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 24 |
| Conread position: | 370-755 |
| Cow position: | chr3:29307223-29306850 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 45 |
| Conread position: | 371-626 |
| Cow position: | chr3:42315821-42316075 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 371-743 |
| Cow position: | chr3:61964419-61964064 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 372-670 |
| Cow position: | chr3:23429980-23430276 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 378-605 |
| Cow position: | chr3:72580841-72580614 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 167 |
| Conread position: | 387-698 |
| Cow position: | chr3:12769551-12769236 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 127, 28 |
| Conread position: | 389-698 |
| Cow position: | chr3:52399866-52399571 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 129, 29 |
| Conread position: | 413-755 |
| Cow position: | chr3:7836844-7837184 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 104 |
| Conread position: | 422-560 |
| Cow position: | chr3:59031139-59031001 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-560 |
| Cow position: | chr3:75272692-75272823 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 439-752 |
| Cow position: | chr3:7820858-7820549 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 209 |
| Conread position: | 442-755 |
| Cow position: | chr3:3400339-3400656 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 459-755 |
| Cow position: | chr3:5158152-5157850 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 467-605 |
| Cow position: | chr3:7826551-7826416 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 472-755 |
| Cow position: | chr3:2657252-2656968 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 472-755 |
| Cow position: | chr3:18061871-18061608 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 92 |
| Conread position: | 492-755 |
| Cow position: | chr3:25262320-25262056 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 74 |
Show alignments to all cow chromosomes.