Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 208-392 |
| Cow position: | chr4:62327311-62327125 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 138, 86 |
| Conread position: | 231-476 |
| Cow position: | chr4:5253783-5253541 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 187, 35 |
| Conread position: | 231-610 |
| Cow position: | chr4:39692412-39692790 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 232-411 |
| Cow position: | chr4:21400709-21400881 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 250-507 |
| Cow position: | chr4:28457769-28457505 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 49 |
| Conread position: | 263-391 |
| Cow position: | chr4:36020983-36020856 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 266-603 |
| Cow position: | chr4:57473531-57473198 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 270-460 |
| Cow position: | chr4:10923119-10923311 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 139, 29 |
| Conread position: | 270-580 |
| Cow position: | chr4:43039762-43039448 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 270-601 |
| Cow position: | chr4:25945405-25945072 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 273-376 |
| Cow position: | chr4:25946018-25945917 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 273-502 |
| Cow position: | chr4:16016424-16016192 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 26 |
| Conread position: | 273-581 |
| Cow position: | chr4:7175638-7175337 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 288-755 |
| Cow position: | chr4:5040071-5039601 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 11 |
| Conread position: | 300-618 |
| Cow position: | chr4:29028013-29027691 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 259 |
| Conread position: | 300-752 |
| Cow position: | chr4:28213559-28214007 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 302-507 |
| Cow position: | chr4:64869085-64868882 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 305-754 |
| Cow position: | chr4:11742424-11742868 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 313-602 |
| Cow position: | chr4:53384287-53384577 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 321-749 |
| Cow position: | chr4:51245700-51245270 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 337-755 |
| Cow position: | chr4:39687178-39686754 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 185 |
| Conread position: | 345-487 |
| Cow position: | chr4:60388124-60387979 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 353-609 |
| Cow position: | chr4:59859639-59859379 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 363-610 |
| Cow position: | chr4:24041643-24041880 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 426-709 |
| Cow position: | chr4:60387928-60387643 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 167 |
| Conread position: | 432-746 |
| Cow position: | chr4:62324097-62323790 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 434-752 |
| Cow position: | chr4:53802664-53802346 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 437-755 |
| Cow position: | chr4:7485232-7484917 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 70 |
| Conread position: | 454-601 |
| Cow position: | chr4:21000971-21001117 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 459-756 |
| Cow position: | chr4:5253364-5253046 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 147, 95 |
| Conread position: | 472-704 |
| Cow position: | chr4:20325443-20325214 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 134, 45 |
| Conread position: | 475-755 |
| Cow position: | chr4:10923852-10924112 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 89 |
| Conread position: | 476-756 |
| Cow position: | chr4:66312857-66312575 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 123, 5 |
| Conread position: | 540-754 |
| Cow position: | chr4:64868807-64868593 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 67, 57 |
Show alignments to all cow chromosomes.