Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 168-425 |
| Cow position: | chr5:67479043-67479295 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 177-411 |
| Cow position: | chr5:34502549-34502776 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 179-578 |
| Cow position: | chr5:34964122-34964516 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 198-610 |
| Cow position: | chr5:47438970-47438561 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 12 |
| Conread position: | 205-651 |
| Cow position: | chr5:16368538-16368081 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 212-531 |
| Cow position: | chr5:40731458-40731767 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 213-447 |
| Cow position: | chr5:69125088-69125320 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 229-755 |
| Cow position: | chr5:45694498-45695003 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 70 |
| Conread position: | 231-379 |
| Cow position: | chr5:2216397-2216543 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 231-753 |
| Cow position: | chr5:15754224-15754743 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 61 |
| Conread position: | 232-394 |
| Cow position: | chr5:69116875-69116711 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 145, 67 |
| Conread position: | 232-485 |
| Cow position: | chr5:56812942-56812687 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 145, 67 |
| Conread position: | 232-650 |
| Cow position: | chr5:44113927-44113517 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 186 |
| Conread position: | 241-482 |
| Cow position: | chr5:7797645-7797406 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 247-754 |
| Cow position: | chr5:44648625-44648116 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 250-565 |
| Cow position: | chr5:62033148-62032832 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 16 |
| Conread position: | 250-755 |
| Cow position: | chr5:47961786-47961288 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 262-755 |
| Cow position: | chr5:2023992-2023521 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 37 |
| Conread position: | 263-411 |
| Cow position: | chr5:65206131-65206281 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 270-601 |
| Cow position: | chr5:55193688-55194025 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 275-707 |
| Cow position: | chr5:11670864-11671289 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 289-560 |
| Cow position: | chr5:37344234-37343965 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 298-738 |
| Cow position: | chr5:52403998-52404454 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 309-755 |
| Cow position: | chr5:43094594-43095047 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 313-699 |
| Cow position: | chr5:5918908-5918518 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 8 |
| Conread position: | 340-756 |
| Cow position: | chr5:10037833-10038260 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 345-557 |
| Cow position: | chr5:12276451-12276231 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 117 |
| Conread position: | 369-755 |
| Cow position: | chr5:68086815-68087202 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 94 |
| Conread position: | 378-755 |
| Cow position: | chr5:12550289-12550669 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 291 |
| Conread position: | 381-750 |
| Cow position: | chr5:34502799-34503162 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 195 |
| Conread position: | 385-556 |
| Cow position: | chr5:45692633-45692799 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 385-755 |
| Cow position: | chr5:2216766-2217132 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 188 |
| Conread position: | 403-756 |
| Cow position: | chr5:14053116-14053466 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 111 |
| Conread position: | 417-753 |
| Cow position: | chr5:75451039-75451379 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 419-568 |
| Cow position: | chr5:35333413-35333562 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-605 |
| Cow position: | chr5:52001703-52001887 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 419-710 |
| Cow position: | chr5:38590582-38590296 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 135 |
| Conread position: | 419-755 |
| Cow position: | chr5:65206496-65206829 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 432-756 |
| Cow position: | chr5:69711260-69711586 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 433-549 |
| Cow position: | chr5:60196675-60196789 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 440-755 |
| Cow position: | chr5:67479449-67479745 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 459-610 |
| Cow position: | chr5:59636340-59636489 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 459-676 |
| Cow position: | chr5:60215990-60216209 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 467-605 |
| Cow position: | chr5:35332907-35333044 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 472-689 |
| Cow position: | chr5:58350254-58350476 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 472-749 |
| Cow position: | chr5:7797106-7796832 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 478-738 |
| Cow position: | chr5:56810909-56810639 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 557-756 |
| Cow position: | chr5:35334491-35334688 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 152, 0 |
Show alignments to all cow chromosomes.