Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-467 |
| Cow position: | chr6:48021610-48021901 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 181-601 |
| Cow position: | chr6:26223037-26222618 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 187-372 |
| Cow position: | chr6:11505571-11505747 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 187-376 |
| Cow position: | chr6:18790648-18790834 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 187-482 |
| Cow position: | chr6:59919864-59920149 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 192-477 |
| Cow position: | chr6:17405572-17405853 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 203-469 |
| Cow position: | chr6:38415837-38415559 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 203-482 |
| Cow position: | chr6:2856190-2855900 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 231-643 |
| Cow position: | chr6:32921813-32921407 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 66 |
| Conread position: | 232-562 |
| Cow position: | chr6:41251407-41251732 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 232-755 |
| Cow position: | chr6:20397252-20396742 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 233-728 |
| Cow position: | chr6:47866254-47866741 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 41 |
| Conread position: | 234-524 |
| Cow position: | chr6:54968210-54968496 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 250-411 |
| Cow position: | chr6:11299277-11299112 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 250-637 |
| Cow position: | chr6:11096434-11096811 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 49 |
| Conread position: | 263-755 |
| Cow position: | chr6:9518608-9519104 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 270-496 |
| Cow position: | chr6:26936607-26936839 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 31 |
| Conread position: | 299-548 |
| Cow position: | chr6:28596422-28596668 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 102, 117 |
| Conread position: | 300-751 |
| Cow position: | chr6:541482-541055 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 300-755 |
| Cow position: | chr6:27903769-27904213 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 321-707 |
| Cow position: | chr6:45553513-45553119 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 321-742 |
| Cow position: | chr6:1566105-1565698 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 321-755 |
| Cow position: | chr6:41284230-41284655 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 336-754 |
| Cow position: | chr6:18405371-18405787 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 341-602 |
| Cow position: | chr6:52441538-52441783 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 341-707 |
| Cow position: | chr6:52439815-52439461 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 350-496 |
| Cow position: | chr6:44570716-44570864 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 373-753 |
| Cow position: | chr6:16440499-16440125 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 47 |
| Conread position: | 378-610 |
| Cow position: | chr6:58621714-58621944 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 378-755 |
| Cow position: | chr6:8812734-8813122 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 37 |
| Conread position: | 378-755 |
| Cow position: | chr6:11299046-11298670 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 383-581 |
| Cow position: | chr6:5713272-5713468 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 110 |
| Conread position: | 420-752 |
| Cow position: | chr6:11073252-11073585 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 212 |
| Conread position: | 421-586 |
| Cow position: | chr6:39768154-39767995 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 426-756 |
| Cow position: | chr6:15594405-15594083 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 220 |
| Conread position: | 429-705 |
| Cow position: | chr6:48777916-48778182 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 133, 59 |
| Conread position: | 438-581 |
| Cow position: | chr6:11097695-11097550 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 439-755 |
| Cow position: | chr6:65201621-65201917 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 441-755 |
| Cow position: | chr6:55022215-55022531 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 272 |
| Conread position: | 459-638 |
| Cow position: | chr6:38415345-38415166 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 470-755 |
| Cow position: | chr6:59920318-59920588 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 472-643 |
| Cow position: | chr6:2854196-2854025 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 132, 102 |
| Conread position: | 497-752 |
| Cow position: | chr6:48019445-48019194 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 534-706 |
| Cow position: | chr6:247068-246901 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 540-755 |
| Cow position: | chr6:28596874-28597091 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 555-755 |
| Cow position: | chr6:41252157-41252360 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 163 |
| Conread position: | 567-752 |
| Cow position: | chr6:5713678-5713868 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 61 |
Show alignments to all cow chromosomes.