Cow genome map

Conread name: Ss1.1-rplun0112_o20.5

Conread position: 177-467
Cow position: chr6:48021610-48021901 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 11, 63

Conread position: 181-601
Cow position: chr6:26223037-26222618 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 66

Conread position: 187-372
Cow position: chr6:11505571-11505747 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 59

Conread position: 187-376
Cow position: chr6:18790648-18790834 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 36

Conread position: 187-482
Cow position: chr6:59919864-59920149 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 55

Conread position: 192-477
Cow position: chr6:17405572-17405853 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 41

Conread position: 203-469
Cow position: chr6:38415837-38415559 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 86

Conread position: 203-482
Cow position: chr6:2856190-2855900 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 106

Conread position: 231-643
Cow position: chr6:32921813-32921407 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 66

Conread position: 232-562
Cow position: chr6:41251407-41251732 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 232-755
Cow position: chr6:20397252-20396742 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 74

Conread position: 233-728
Cow position: chr6:47866254-47866741 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 41

Conread position: 234-524
Cow position: chr6:54968210-54968496 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 118, 32

Conread position: 250-411
Cow position: chr6:11299277-11299112 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 51

Conread position: 250-637
Cow position: chr6:11096434-11096811 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 49

Conread position: 263-755
Cow position: chr6:9518608-9519104 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 36

Conread position: 270-496
Cow position: chr6:26936607-26936839 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 108, 31

Conread position: 299-548
Cow position: chr6:28596422-28596668 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 102, 117

Conread position: 300-751
Cow position: chr6:541482-541055 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 300-755
Cow position: chr6:27903769-27904213 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 321-707
Cow position: chr6:45553513-45553119 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 98

Conread position: 321-742
Cow position: chr6:1566105-1565698 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 13

Conread position: 321-755
Cow position: chr6:41284230-41284655 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 82

Conread position: 336-754
Cow position: chr6:18405371-18405787 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 85

Conread position: 341-602
Cow position: chr6:52441538-52441783 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 32, 78

Conread position: 341-707
Cow position: chr6:52439815-52439461 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 32, 78

Conread position: 350-496
Cow position: chr6:44570716-44570864 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 67

Conread position: 373-753
Cow position: chr6:16440499-16440125 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 47

Conread position: 378-610
Cow position: chr6:58621714-58621944 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 131, 37

Conread position: 378-755
Cow position: chr6:8812734-8813122 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 37

Conread position: 378-755
Cow position: chr6:11299046-11298670 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 37

Conread position: 383-581
Cow position: chr6:5713272-5713468 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 110

Conread position: 420-752
Cow position: chr6:11073252-11073585 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 212

Conread position: 421-586
Cow position: chr6:39768154-39767995 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 135
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 93, 26

Conread position: 426-756
Cow position: chr6:15594405-15594083 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 220

Conread position: 429-705
Cow position: chr6:48777916-48778182 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 133, 59

Conread position: 438-581
Cow position: chr6:11097695-11097550 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 439-755
Cow position: chr6:65201621-65201917 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 119, 0

Conread position: 441-755
Cow position: chr6:55022215-55022531 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 272

Conread position: 459-638
Cow position: chr6:38415345-38415166 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 145, 56

Conread position: 470-755
Cow position: chr6:59920318-59920588 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 107, 0

Conread position: 472-643
Cow position: chr6:2854196-2854025 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 102

Conread position: 497-752
Cow position: chr6:48019445-48019194 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 98, 0

Conread position: 534-706
Cow position: chr6:247068-246901 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 540-755
Cow position: chr6:28596874-28597091 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 66, 172

Conread position: 555-755
Cow position: chr6:41252157-41252360 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 163

Conread position: 567-752
Cow position: chr6:5713678-5713868 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 61

Show alignments to all cow chromosomes.