Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-423 |
| Cow position: | chr7:35030168-35030412 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 204, 120 |
| Conread position: | 178-506 |
| Cow position: | chr7:4596486-4596808 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 187-371 |
| Cow position: | chr7:52394134-52394322 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 118 |
| Conread position: | 187-557 |
| Cow position: | chr7:59666915-59666542 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 190-403 |
| Cow position: | chr7:60480122-60480333 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 190-755 |
| Cow position: | chr7:52567996-52568571 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 205-468 |
| Cow position: | chr7:31412692-31412944 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 232-627 |
| Cow position: | chr7:62048271-62047872 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 67 |
| Conread position: | 232-650 |
| Cow position: | chr7:11136911-11137330 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 62 |
| Conread position: | 232-689 |
| Cow position: | chr7:40195066-40194615 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 67 |
| Conread position: | 232-741 |
| Cow position: | chr7:41550999-41551498 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 232-755 |
| Cow position: | chr7:21937560-21938066 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 35 |
| Conread position: | 250-433 |
| Cow position: | chr7:7489062-7489243 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 250-705 |
| Cow position: | chr7:63967104-63967560 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 49 |
| Conread position: | 261-702 |
| Cow position: | chr7:20637846-20637419 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 263-478 |
| Cow position: | chr7:21979872-21979656 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 268-469 |
| Cow position: | chr7:62016874-62017071 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 270-554 |
| Cow position: | chr7:43568440-43568729 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 270-561 |
| Cow position: | chr7:47943594-47943894 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 270-600 |
| Cow position: | chr7:4588194-4588525 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 270-601 |
| Cow position: | chr7:33434144-33433806 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 273-410 |
| Cow position: | chr7:41720268-41720406 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 273-412 |
| Cow position: | chr7:4242278-4242139 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 273-495 |
| Cow position: | chr7:16711597-16711818 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 273-496 |
| Cow position: | chr7:19965142-19965359 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 275-755 |
| Cow position: | chr7:15674233-15674698 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 279-376 |
| Cow position: | chr7:11794822-11794727 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 299-705 |
| Cow position: | chr7:27335143-27335547 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 300-661 |
| Cow position: | chr7:64151372-64151736 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 117 |
| Conread position: | 321-755 |
| Cow position: | chr7:4257241-4256810 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 159 |
| Conread position: | 321-755 |
| Cow position: | chr7:51338298-51337869 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 17 |
| Conread position: | 323-579 |
| Cow position: | chr7:52398843-52398587 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 337-602 |
| Cow position: | chr7:33600252-33599986 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 370-604 |
| Cow position: | chr7:4242131-4241898 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 371-554 |
| Cow position: | chr7:15434025-15434206 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 419-752 |
| Cow position: | chr7:11847673-11847352 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 426-755 |
| Cow position: | chr7:35030458-35030786 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 92 |
| Conread position: | 439-698 |
| Cow position: | chr7:25967374-25967637 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 441-750 |
| Cow position: | chr7:68949314-68949025 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 448-755 |
| Cow position: | chr7:43862245-43861942 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 459-710 |
| Cow position: | chr7:62017133-62017385 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 126, 175 |
| Conread position: | 481-755 |
| Cow position: | chr7:7489471-7489746 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 123, 12 |
Show alignments to all cow chromosomes.