Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 186-605 |
| Cow position: | chr8:37894308-37894727 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 125 |
| Conread position: | 187-755 |
| Cow position: | chr8:5651601-5652142 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 200-602 |
| Cow position: | chr8:52006828-52006418 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 206-650 |
| Cow position: | chr8:51945405-51944962 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 206-710 |
| Cow position: | chr8:58287050-58286534 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 229-683 |
| Cow position: | chr8:48708062-48708531 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 229-756 |
| Cow position: | chr8:43464353-43463824 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 73 |
| Conread position: | 232-391 |
| Cow position: | chr8:36937205-36937050 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 232-605 |
| Cow position: | chr8:841367-840995 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 64 |
| Conread position: | 250-410 |
| Cow position: | chr8:17145955-17146115 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 250-411 |
| Cow position: | chr8:5441242-5441081 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 250-545 |
| Cow position: | chr8:19821621-19821328 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 49 |
| Conread position: | 250-755 |
| Cow position: | chr8:33522502-33522999 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 266-483 |
| Cow position: | chr8:36273494-36273273 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 137, 33 |
| Conread position: | 270-601 |
| Cow position: | chr8:28279126-28279461 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 270-755 |
| Cow position: | chr8:23710530-23710063 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 345 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 273-412 |
| Cow position: | chr8:19662942-19662802 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 273-413 |
| Cow position: | chr8:55984770-55984910 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 273-503 |
| Cow position: | chr8:39746413-39746645 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 281-707 |
| Cow position: | chr8:54010048-54010477 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 299-561 |
| Cow position: | chr8:39080916-39081175 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 312-755 |
| Cow position: | chr8:37974863-37975309 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 321-499 |
| Cow position: | chr8:27911577-27911760 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 322-756 |
| Cow position: | chr8:9075701-9076129 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 323-755 |
| Cow position: | chr8:36164112-36164545 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 337-755 |
| Cow position: | chr8:6170756-6170328 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 355-755 |
| Cow position: | chr8:38259965-38260368 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 248 |
| Conread position: | 356-603 |
| Cow position: | chr8:21277208-21276956 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 23, 183 |
| Conread position: | 361-709 |
| Cow position: | chr8:15624821-15625176 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 370-679 |
| Cow position: | chr8:5441064-5440752 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 44 |
| Conread position: | 376-754 |
| Cow position: | chr8:17146139-17146524 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 38 |
| Conread position: | 378-707 |
| Cow position: | chr8:35907898-35907565 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 140 |
| Conread position: | 387-755 |
| Cow position: | chr8:61038599-61038229 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 432-617 |
| Cow position: | chr8:6334867-6335054 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 444-754 |
| Cow position: | chr8:36937035-36936729 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 49 |
| Conread position: | 472-755 |
| Cow position: | chr8:21988209-21988491 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 45 |
| Conread position: | 472-755 |
| Cow position: | chr8:36273091-36272810 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 126, 82 |
| Conread position: | 475-755 |
| Cow position: | chr8:36267616-36267333 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 565-755 |
| Cow position: | chr8:47860168-47859978 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 148 |
Show alignments to all cow chromosomes.