Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 177-604 |
| Cow position: | chr9:9535568-9535993 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 177-604 |
| Cow position: | chr9:9584652-9584229 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 186-601 |
| Cow position: | chr9:54361301-54360896 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 187-460 |
| Cow position: | chr9:49637245-49637520 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 187-467 |
| Cow position: | chr9:23383974-23383693 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 187-601 |
| Cow position: | chr9:39590190-39590605 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 212-360 |
| Cow position: | chr9:10726940-10726794 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 229-473 |
| Cow position: | chr9:54454938-54454691 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 113, 16 |
| Conread position: | 231-452 |
| Cow position: | chr9:9257338-9257559 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 231-755 |
| Cow position: | chr9:3498055-3497529 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 232-410 |
| Cow position: | chr9:3440112-3439932 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 147, 67 |
| Conread position: | 232-755 |
| Cow position: | chr9:6598844-6599364 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 9 |
| Conread position: | 234-473 |
| Cow position: | chr9:22667902-22668142 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 259-756 |
| Cow position: | chr9:34174221-34174725 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 273-503 |
| Cow position: | chr9:10927253-10927495 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 273-504 |
| Cow position: | chr9:2261760-2261525 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 299-457 |
| Cow position: | chr9:29098054-29097892 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 148 |
| Conread position: | 299-603 |
| Cow position: | chr9:51888861-51889164 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 321-603 |
| Cow position: | chr9:2604296-2604581 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 321-622 |
| Cow position: | chr9:44403755-44403456 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 321-698 |
| Cow position: | chr9:50215486-50215117 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 346-497 |
| Cow position: | chr9:24805369-24805218 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 353-756 |
| Cow position: | chr9:10726614-10726237 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 356-755 |
| Cow position: | chr9:20709426-20709024 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 363-756 |
| Cow position: | chr9:58397170-58397567 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 370-610 |
| Cow position: | chr9:49371278-49371038 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 370-706 |
| Cow position: | chr9:3439914-3439606 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 370-755 |
| Cow position: | chr9:8759890-8760281 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 37 |
| Conread position: | 457-755 |
| Cow position: | chr9:13082544-13082831 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 459-601 |
| Cow position: | chr9:23382940-23382799 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 459-755 |
| Cow position: | chr9:56283770-56284072 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 471-687 |
| Cow position: | chr9:29097902-29097682 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 519-752 |
| Cow position: | chr9:8863211-8863449 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 557-755 |
| Cow position: | chr9:9731086-9730886 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 113 |
Show alignments to all cow chromosomes.